Gm43260 Gene Detail

Summary

• Symbol
  Gm43260
• Name
  predicted gene 43260

• Feature Type
  lncRNA gene
• IDs
  MGI:5663397
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104087928-104090357 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663397	lncRNA gene	Chr3:104087928-104090357 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036985	sense intronic lncRNA gene	Chr3:105478736-105481165 (-)
A/J	MGP_AJ_G0036974	sense intronic lncRNA gene	Chr3:102125985-102128414 (-)
AKR/J	MGP_AKRJ_G0036921	sense intronic lncRNA gene	Chr3:104621576-104624005 (-)
BALB/cJ	MGP_BALBcJ_G0036964	sense intronic lncRNA gene	Chr3:101898305-101900734 (-)
C3H/HeJ	MGP_C3HHeJ_G0036651	sense intronic lncRNA gene	Chr3:105000944-105003373 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037477	sense intronic lncRNA gene	Chr3:109404673-109407102 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034529	sense intronic lncRNA gene	Chr3:98257180-98259611 (-)
CAST/EiJ	MGP_CASTEiJ_G0035839	sense intronic lncRNA gene	Chr3:104112652-104115081 (-)
CBA/J	MGP_CBAJ_G0036626	sense intronic lncRNA gene	Chr3:113139126-113141555 (-)
DBA/2J	MGP_DBA2J_G0036801	sense intronic lncRNA gene	Chr3:101374711-101377140 (-)
FVB/NJ	MGP_FVBNJ_G0036751	sense intronic lncRNA gene	Chr3:99304312-99306741 (-)
LP/J	MGP_LPJ_G0036848	sense intronic lncRNA gene	Chr3:106832264-106834693 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036759	sense intronic lncRNA gene	Chr3:119281532-119285430 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037595	sense intronic lncRNA gene	Chr3:104182563-104184992 (-)
PWK/PhJ	MGP_PWKPhJ_G0035531	sense intronic lncRNA gene	Chr3:101156071-101158500 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035340	sense intronic lncRNA gene	Chr3:102233885-102236309 (-)
WSB/EiJ	MGP_WSBEiJ_G0036039	sense intronic lncRNA gene	Chr3:104746337-104748766 (-)

Homology

• Gene Tree
  Gm43260
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105933 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105933	Ensembl Gene Model | MGI Sequence Detail	2430	C57BL/6J
transcript	ENSMUST00000197378	Ensembl | MGI Sequence Detail	2430	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;