Gm43302 Gene Detail

Summary

• Symbol
  Gm43302
• Name
  predicted gene 43302

• Feature Type
  protein coding gene
• IDs
  MGI:5663439
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:105362773-105441561 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  1221 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663439	protein coding gene	Chr5:105362773-105441561 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029824	protein coding gene	Chr5:107210745-107248089 (-)
A/J	MGP_AJ_G0029786	protein coding gene	Chr5:102730801-102792441 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0029797	protein coding gene	Chr5:103856455-104020833 (-)
C3H/HeJ	MGP_C3HHeJ_G0029521	protein coding gene	Chr5:106863987-106951026 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0027487	protein coding gene	Chr5:98054042-98075853 (-)
CAST/EiJ	MGP_CASTEiJ_G0028934	protein coding gene	Chr5:105807489-105830825 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0029634	protein coding gene	Chr5:103020525-103305909 (-)
FVB/NJ	MGP_FVBNJ_G0029591	protein coding gene	Chr5:101772912-101798907 (-)
LP/J	MGP_LPJ_G0029721	protein coding gene	Chr5:107489565-107645099 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029624	protein coding gene	Chr5:120298768-120447318 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030288	protein coding gene	Chr5:105930728-106014679 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0028482	protein coding gene	Chr5:103251054-103302711 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm43302
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43302
• Find Mice (IMSR)
  21 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• UniProt
  1

• Ensembl
  ENSMUSG00000079362 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079362	Ensembl Gene Model | MGI Sequence Detail	78789	C57BL/6J
transcript	ENSMUST00000050011	Ensembl | MGI Sequence Detail	4310	Not Applicable
polypeptide	ENSMUSP00000062528	Ensembl | MGI Sequence Detail	611	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR030386 GB1/RHD3-type guanine nucleotide-binding (G) domain
  IPR003191 Guanylate-binding protein/Atlastin, C-terminal
  IPR037684 Guanylate-binding protein, C-terminal
  IPR036543 Guanylate-binding protein, C-terminal domain superfamily
  IPR015894 Guanylate-binding protein, N-terminal
  IPR027417 P-loop containing nucleoside triphosphate hydrolase

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:172364 Kim BH, et al., A family of IFN-gamma-inducible 65-kD GTPases protects against bacterial infection. Science. 2011 May 6;332(6030):717-21

TSS for Gm43302:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52310	Chr5:105441554-105441571 (-)	-2 bp
Tssr52309	Chr5:105435940-105435959 (-)	5,611 bp
Tssr52308	Chr5:105429653-105429663 (-)	11,903 bp