Gm43329 Gene Detail

Summary

• Symbol
  Gm43329
• Name
  predicted gene 43329

• Feature Type
  lncRNA gene
• IDs
  MGI:5663466
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:105674282-105677513 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663466	lncRNA gene	Chr3:105674282-105677513 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036997	sense intronic lncRNA gene	Chr3:107145408-107148639 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0036933	sense intronic lncRNA gene	Chr3:106294167-106299782 (-)
BALB/cJ	MGP_BALBcJ_G0036976	sense intronic lncRNA gene	Chr3:103501380-103505581 (-)
C3H/HeJ	MGP_C3HHeJ_G0036663	sense intronic lncRNA gene	Chr3:106633627-106636949 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037489	sense intronic lncRNA gene	Chr3:111144845-111148076 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034541	sense intronic lncRNA gene	Chr3:99797788-99801075 (-)
CAST/EiJ	MGP_CASTEiJ_G0035851	sense intronic lncRNA gene	Chr3:105784585-105787820 (-)
CBA/J	MGP_CBAJ_G0036638	sense intronic lncRNA gene	Chr3:114887220-114890559 (-)
DBA/2J	MGP_DBA2J_G0036813	sense intronic lncRNA gene	Chr3:102958158-102961476 (-)
FVB/NJ	MGP_FVBNJ_G0036763	sense intronic lncRNA gene	Chr3:100889120-100892351 (-)
LP/J	MGP_LPJ_G0036860	sense intronic lncRNA gene	Chr3:108546071-108550552 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036771	sense intronic lncRNA gene	Chr3:121014271-121017598 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0035543	sense intronic lncRNA gene	Chr3:102739839-102743094 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035352	sense intronic lncRNA gene	Chr3:103871379-103874565 (-)
WSB/EiJ	MGP_WSBEiJ_G0036051	sense intronic lncRNA gene	Chr3:106399320-106402556 (-)

Homology

• Gene Tree
  Gm43329
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000105842 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105842	Ensembl Gene Model | MGI Sequence Detail	3232	C57BL/6J
transcript	ENSMUST00000200120	Ensembl | MGI Sequence Detail	3232	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43329:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34928	Chr3:105678321-105678327 (-)	-811 bp