Gm43330 Gene Detail

Summary

• Symbol
  Gm43330
• Name
  predicted gene 43330

• Feature Type
  lncRNA gene
• IDs
  MGI:5663467
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:105690191-105692343 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663467	lncRNA gene	Chr3:105690191-105692343 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036998	sense intronic lncRNA gene	Chr3:107165647-107167799 (-)
A/J	MGP_AJ_G0036986	sense intronic lncRNA gene	Chr3:103731652-103733804 (-)
AKR/J	MGP_AKRJ_G0036934	sense intronic lncRNA gene	Chr3:106313641-106315793 (-)
BALB/cJ	MGP_BALBcJ_G0036977	sense intronic lncRNA gene	Chr3:103518649-103520610 (-)
C3H/HeJ	MGP_C3HHeJ_G0036664	sense intronic lncRNA gene	Chr3:106649581-106651733 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037490	sense intronic lncRNA gene	Chr3:111170305-111172457 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034542	sense intronic lncRNA gene	Chr3:99813804-99815924 (-)
CAST/EiJ	MGP_CASTEiJ_G0035852	sense intronic lncRNA gene	Chr3:105802469-105805965 (-)
CBA/J	MGP_CBAJ_G0036639	sense intronic lncRNA gene	Chr3:114908627-114910779 (-)
DBA/2J	MGP_DBA2J_G0036814	sense intronic lncRNA gene	Chr3:102974177-102976329 (-)
FVB/NJ	MGP_FVBNJ_G0036764	sense intronic lncRNA gene	Chr3:100905243-100907395 (-)
LP/J	MGP_LPJ_G0036861	sense intronic lncRNA gene	Chr3:108565220-108567372 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036772	sense intronic lncRNA gene	Chr3:121034035-121036848 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037607	sense intronic lncRNA gene	Chr3:105864478-105866626 (-)
PWK/PhJ	MGP_PWKPhJ_G0035544	sense intronic lncRNA gene	Chr3:102756999-102759190 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035353	sense intronic lncRNA gene	Chr3:103889804-103891987 (-)
WSB/EiJ	MGP_WSBEiJ_G0036052	sense intronic lncRNA gene	Chr3:106419798-106421955 (-)

Homology

• Gene Tree
  Gm43330
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106341 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106341	Ensembl Gene Model | MGI Sequence Detail	2153	C57BL/6J
transcript	ENSMUST00000199706	Ensembl | MGI Sequence Detail	2153	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43330:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34929	Chr3:105693172-105693176 (-)	-831 bp