Gm43331 Gene Detail

Summary

• Symbol
  Gm43331
• Name
  predicted gene 43331

• Feature Type
  lncRNA gene
• IDs
  MGI:5663468
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:105694949-105696637 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663468	lncRNA gene	Chr3:105694949-105696637 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036999	sense intronic lncRNA gene	Chr3:107170405-107172093 (-)
A/J	MGP_AJ_G0036987	sense intronic lncRNA gene	Chr3:103736410-103738098 (-)
AKR/J	MGP_AKRJ_G0036935	sense intronic lncRNA gene	Chr3:106318399-106320087 (-)
BALB/cJ	MGP_BALBcJ_G0036978	sense intronic lncRNA gene	Chr3:103523214-103524902 (-)
C3H/HeJ	MGP_C3HHeJ_G0036665	sense intronic lncRNA gene	Chr3:106654339-106656027 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037491	sense intronic lncRNA gene	Chr3:111175063-111176751 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034543	sense intronic lncRNA gene	Chr3:99818595-99820249 (-)
CAST/EiJ	MGP_CASTEiJ_G0035853	sense intronic lncRNA gene	Chr3:105808570-105810264 (-)
CBA/J	MGP_CBAJ_G0036640	sense intronic lncRNA gene	Chr3:114913385-114915073 (-)
DBA/2J	MGP_DBA2J_G0036815	sense intronic lncRNA gene	Chr3:102978932-102980620 (-)
FVB/NJ	MGP_FVBNJ_G0036765	sense intronic lncRNA gene	Chr3:100910033-100911721 (-)
LP/J	MGP_LPJ_G0036862	sense intronic lncRNA gene	Chr3:108569974-108571662 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036773	sense intronic lncRNA gene	Chr3:121039452-121041140 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037608	sense intronic lncRNA gene	Chr3:105869231-105870931 (-)
PWK/PhJ	MGP_PWKPhJ_G0035545	sense intronic lncRNA gene	Chr3:102761872-102763572 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035354	sense intronic lncRNA gene	Chr3:103894801-103896490 (-)
WSB/EiJ	MGP_WSBEiJ_G0036053	sense intronic lncRNA gene	Chr3:106424558-106426246 (-)

Homology

• Gene Tree
  Gm43331
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104910 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104910	Ensembl Gene Model | MGI Sequence Detail	1689	C57BL/6J
transcript	ENSMUST00000197991	Ensembl | MGI Sequence Detail	1689	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;