Gm43377 Gene Detail

Summary

• Symbol
  Gm43377
• Name
  predicted gene 43377

• Feature Type
  unclassified gene
• IDs
  MGI:5663514
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:35553442-35553896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663514	unclassified gene	Chr5:35553442-35553896 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001448	unclassified gene	Chr5:33667573-33668027 (+)
A/J	MGP_AJ_G0001429	unclassified gene	Chr5:32577752-32578206 (+)
AKR/J	MGP_AKRJ_G0001415	unclassified gene	Chr5:33824462-33824916 (+)
BALB/cJ	MGP_BALBcJ_G0001425	unclassified gene	Chr5:33098672-33099126 (+)
C3H/HeJ	MGP_C3HHeJ_G0001402	unclassified gene	Chr5:33850110-33850564 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001543	unclassified gene	Chr5:35576222-35576676 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001237	unclassified gene	Chr5:30341119-30341748 (+)
CAST/EiJ	MGP_CASTEiJ_G0001380	unclassified gene	Chr5:32938223-32938677 (+)
CBA/J	MGP_CBAJ_G0001393	unclassified gene	Chr5:36406804-36407258 (+)
DBA/2J	MGP_DBA2J_G0001399	unclassified gene	Chr5:32725042-32725496 (+)
FVB/NJ	MGP_FVBNJ_G0001408	unclassified gene	Chr5:32180175-32180629 (+)
LP/J	MGP_LPJ_G0001454	unclassified gene	Chr5:34100297-34100751 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001392	unclassified gene	Chr5:37232682-37233136 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001529	unclassified gene	Chr5:33332005-33332459 (+)
PWK/PhJ	MGP_PWKPhJ_G0001336	unclassified gene	Chr5:31886849-31887303 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001306	unclassified gene	Chr5:32788534-32788989 (+)
WSB/EiJ	MGP_WSBEiJ_G0001396	unclassified gene	Chr5:33390771-33391225 (+)

Homology

• Gene Tree
  Gm43377
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106970 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106970	Ensembl Gene Model | MGI Sequence Detail	455	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43377:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45947	Chr5:35553000-35553006 (+)	-439 bp