Gm43380 Pseudogene Detail

Summary

• Symbol
  Gm43380
• Name
  predicted gene 43380

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5663517
  NCBI Gene: 115490149
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:143053408-143053627 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663517	pseudogene	Chr5:143024746-143054077 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013302	pseudogene	Chr5:148375549-148375768 (+)
A/J	MGP_AJ_G0013281	pseudogene	Chr5:142003267-142003486 (+)
AKR/J	MGP_AKRJ_G0013246	pseudogene	Chr5:146434787-146435006 (+)
BALB/cJ	MGP_BALBcJ_G0013260	pseudogene	Chr5:143248803-143249022 (+)
C3H/HeJ	MGP_C3HHeJ_G0013110	pseudogene	Chr5:147254906-147255125 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013629	pseudogene	Chr5:153786436-153786655 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012830	pseudogene	Chr5:146739836-146740041 (+)
CBA/J	MGP_CBAJ_G0013078	pseudogene	Chr5:160102681-160102900 (+)
DBA/2J	MGP_DBA2J_G0013161	pseudogene	Chr5:141761477-141761696 (+)
FVB/NJ	MGP_FVBNJ_G0013160	pseudogene	Chr5:140969526-140969745 (+)
LP/J	MGP_LPJ_G0013229	pseudogene	Chr5:148968988-148969207 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013177	pseudogene	Chr5:162554770-162554989 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013631	pseudogene	Chr5:146291500-146291719 (+)
PWK/PhJ	MGP_PWKPhJ_G0012645	pseudogene	Chr5:140851250-140851455 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012435	pseudogene	Chr5:144035058-144035262 (+)
WSB/EiJ	MGP_WSBEiJ_G0012870	pseudogene	Chr5:147091744-147091963 (+)

Homology

• Gene Tree
  Gm43380
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  3

• Ensembl
  ENSMUSG00000105714 (Evidence)
• NCBI Gene
  115490149

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105714	Ensembl Gene Model | MGI Sequence Detail	220	C57BL/6J
transcript	ENSMUST00000200421	Ensembl | MGI Sequence Detail	220	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;