Gm43387 Gene Detail

Summary

• Symbol
  Gm43387
• Name
  predicted gene 43387

• Feature Type
  lncRNA gene
• IDs
  MGI:5663524
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:103689230-103690295 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663524	lncRNA gene	Chr3:103689230-103690295 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036974	sense intronic lncRNA gene	Chr3:105070291-105071356 (-)
A/J	MGP_AJ_G0036962	sense intronic lncRNA gene	Chr3:101724859-101725924 (-)
AKR/J	MGP_AKRJ_G0036909	sense intronic lncRNA gene	Chr3:104207502-104208567 (-)
BALB/cJ	MGP_BALBcJ_G0036953	sense intronic lncRNA gene	Chr3:101494144-101495209 (-)
C3H/HeJ	MGP_C3HHeJ_G0036639	sense intronic lncRNA gene	Chr3:104576533-104577598 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037465	sense intronic lncRNA gene	Chr3:108964910-108965975 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034520	sense intronic lncRNA gene	Chr3:97851674-97852746 (-)
CAST/EiJ	MGP_CASTEiJ_G0035828	sense intronic lncRNA gene	Chr3:103690491-103691556 (-)
CBA/J	MGP_CBAJ_G0036614	sense intronic lncRNA gene	Chr3:112711630-112712695 (-)
DBA/2J	MGP_DBA2J_G0036789	sense intronic lncRNA gene	Chr3:100970782-100971847 (-)
FVB/NJ	MGP_FVBNJ_G0036739	sense intronic lncRNA gene	Chr3:98898624-98899689 (-)
LP/J	MGP_LPJ_G0036837	sense intronic lncRNA gene	Chr3:106409845-106410910 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036747	sense intronic lncRNA gene	Chr3:118817470-118818535 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037583	sense intronic lncRNA gene	Chr3:103763904-103764969 (-)
PWK/PhJ	MGP_PWKPhJ_G0035520	sense intronic lncRNA gene	Chr3:100742177-100743241 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035332	sense intronic lncRNA gene	Chr3:101827648-101828711 (-)
WSB/EiJ	MGP_WSBEiJ_G0036028	sense intronic lncRNA gene	Chr3:104312655-104313720 (-)

Homology

• Gene Tree
  Gm43387
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104874 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104874	Ensembl Gene Model | MGI Sequence Detail	1066	C57BL/6J
transcript	ENSMUST00000196896	Ensembl | MGI Sequence Detail	1066	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;