Gm43397 Gene Detail

Summary

• Symbol
  Gm43397
• Name
  predicted gene 43397

• Feature Type
  lncRNA gene
• IDs
  MGI:5663534
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:143320390-143321180 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663534	lncRNA gene	Chr5:143320390-143321180 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006849	lincRNA gene	Chr5:148660256-148661046 (+)
A/J	MGP_AJ_G0006843	lincRNA gene	Chr5:142279884-142280674 (+)
AKR/J	MGP_AKRJ_G0006813	lincRNA gene	Chr5:146739223-146740013 (+)
BALB/cJ	MGP_BALBcJ_G0006819	lincRNA gene	Chr5:143531243-143532033 (+)
C3H/HeJ	MGP_C3HHeJ_G0006764	lincRNA gene	Chr5:147551117-147551907 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006983	lincRNA gene	Chr5:154087819-154088609 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006235	lincRNA gene	Chr5:136060475-136061280 (+)
CAST/EiJ	MGP_CASTEiJ_G0006683	lincRNA gene	Chr5:147048441-147049249 (+)
CBA/J	MGP_CBAJ_G0006746	lincRNA gene	Chr5:160438620-160439410 (+)
DBA/2J	MGP_DBA2J_G0006766	lincRNA gene	Chr5:142046651-142047441 (+)
FVB/NJ	MGP_FVBNJ_G0006789	lincRNA gene	Chr5:141257644-141258434 (+)
LP/J	MGP_LPJ_G0006849	lincRNA gene	Chr5:149262208-149262998 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006771	lincRNA gene	Chr5:162839785-162840575 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006986	lincRNA gene	Chr5:146584633-146585423 (+)
PWK/PhJ	MGP_PWKPhJ_G0006625	lincRNA gene	Chr5:141133575-141134394 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006532	lincRNA gene	Chr5:144326594-144327402 (+)
WSB/EiJ	MGP_WSBEiJ_G0006737	lincRNA gene	Chr5:147375800-147376600 (+)

Homology

• Gene Tree
  Gm43397
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104875 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104875	Ensembl Gene Model | MGI Sequence Detail	791	C57BL/6J
transcript	ENSMUST00000196422	Ensembl | MGI Sequence Detail	481	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;