Gm43440 Pseudogene Detail

Summary

• Symbol
  Gm43440
• Name
  predicted gene 43440

• Feature Type
  pseudogene
• IDs
  MGI:5663577
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:173995268-173997290 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663577	pseudogene	Chr1:173995268-173997290 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039936	pseudogene	Chr1:180221403-180222782 (+)
A/J	MGP_AJ_G0039945	pseudogene	Chr1:172914339-172915718 (+)
AKR/J	MGP_AKRJ_G0039864	pseudogene	Chr1:178130720-178132093 (+)
BALB/cJ	MGP_BALBcJ_G0039919	pseudogene	Chr1:173435152-173436531 (+)
C3H/HeJ	MGP_C3HHeJ_G0039567	pseudogene	Chr1:178757915-178759294 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040495	pseudogene	Chr1:186268825-186272865 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037060	pseudogene	Chr1:164374531-164376652 (+)
CAST/EiJ	MGP_CASTEiJ_G0038677	pseudogene	Chr1:178102973-178105515 (+)
CBA/J	MGP_CBAJ_G0039535	pseudogene	Chr1:192980933-192982312 (+)
DBA/2J	MGP_DBA2J_G0039734	pseudogene	Chr1:171850510-171851889 (+)
FVB/NJ	MGP_FVBNJ_G0039697	pseudogene	Chr1:169935633-169937012 (+)
LP/J	MGP_LPJ_G0039773	pseudogene	Chr1:181349020-181350399 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039686	pseudogene	Chr1:200179674-200181053 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040588	pseudogene	Chr1:177948996-177950375 (+)
PWK/PhJ	MGP_PWKPhJ_G0038354	pseudogene	Chr1:170933637-170935016 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038084	pseudogene	Chr1:176965278-176966654 (+)
WSB/EiJ	MGP_WSBEiJ_G0038896	pseudogene	Chr1:178102840-178104220 (+)

Homology

• Gene Tree
  Gm43440
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm43440
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107114 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107114	Ensembl Gene Model | MGI Sequence Detail	2023	C57BL/6J
transcript	ENSMUST00000201957	Ensembl | MGI Sequence Detail	729	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;