Gm43459 Pseudogene Detail

Summary

• Symbol
  Gm43459
• Name
  predicted gene 43459

• Feature Type
  pseudogene
• IDs
  MGI:5663596
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:34254048-34254378 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663596	pseudogene	Chr5:34254048-34254378 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013053	pseudogene	Chr5:32299217-32299547 (+)
A/J	MGP_AJ_G0013037	pseudogene	Chr5:31247892-31248222 (+)
AKR/J	MGP_AKRJ_G0013004	pseudogene	Chr5:32458501-32458831 (+)
BALB/cJ	MGP_BALBcJ_G0013017	pseudogene	Chr5:31780893-31781223 (+)
C3H/HeJ	MGP_C3HHeJ_G0012868	pseudogene	Chr5:32493979-32494309 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013376	pseudogene	Chr5:34189682-34190012 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011575	pseudogene	Chr5:29036011-29036326 (+)
CAST/EiJ	MGP_CASTEiJ_G0012600	pseudogene	Chr5:31557504-31557834 (+)
CBA/J	MGP_CBAJ_G0012835	pseudogene	Chr5:34930427-34930757 (+)
DBA/2J	MGP_DBA2J_G0012913	pseudogene	Chr5:31424221-31424551 (+)
FVB/NJ	MGP_FVBNJ_G0012919	pseudogene	Chr5:30854352-30854682 (+)
LP/J	MGP_LPJ_G0012986	pseudogene	Chr5:32722452-32722782 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012937	pseudogene	Chr5:35805146-35805476 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013378	pseudogene	Chr5:31962297-31962627 (+)
PWK/PhJ	MGP_PWKPhJ_G0012419	pseudogene	Chr5:30562170-30562500 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012220	pseudogene	Chr5:31414647-31414977 (+)
WSB/EiJ	MGP_WSBEiJ_G0012637	pseudogene	Chr5:32031600-32031930 (+)

Homology

• Gene Tree
  Gm43459
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43459
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106771 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106771	Ensembl Gene Model | MGI Sequence Detail	331	C57BL/6J
transcript	ENSMUST00000202093	Ensembl | MGI Sequence Detail	331	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17