Gm43462 Gene Detail

Summary

• Symbol
  Gm43462
• Name
  predicted gene 43462

• Feature Type
  lncRNA gene
• IDs
  MGI:5663599
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:100534613-100538260 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663599	lncRNA gene	Chr3:100534613-100538260 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036960	sense intronic lncRNA gene	Chr3:101745700-101749983 (-)
A/J	MGP_AJ_G0036948	sense intronic lncRNA gene	Chr3:98536707-98540348 (-)
AKR/J	MGP_AKRJ_G0036895	sense intronic lncRNA gene	Chr3:100929533-100933174 (-)
BALB/cJ	MGP_BALBcJ_G0036939	sense intronic lncRNA gene	Chr3:98303459-98307100 (-)
C3H/HeJ	MGP_C3HHeJ_G0036625	sense intronic lncRNA gene	Chr3:101247475-101251116 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037451	sense intronic lncRNA gene	Chr3:105480814-105484484 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034506	sense intronic lncRNA gene	Chr3:94745568-94749421 (-)
CAST/EiJ	MGP_CASTEiJ_G0035814	sense intronic lncRNA gene	Chr3:100352516-100356120 (-)
CBA/J	MGP_CBAJ_G0036600	sense intronic lncRNA gene	Chr3:109093454-109096841 (-)
DBA/2J	MGP_DBA2J_G0036775	sense intronic lncRNA gene	Chr3:97783002-97786754 (-)
FVB/NJ	MGP_FVBNJ_G0036725	sense intronic lncRNA gene	Chr3:95714789-95718436 (-)
LP/J	MGP_LPJ_G0036823	sense intronic lncRNA gene	Chr3:103107637-103111161 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036733	sense intronic lncRNA gene	Chr3:115341672-115345097 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037569	sense intronic lncRNA gene	Chr3:100432330-100435938 (-)
PWK/PhJ	MGP_PWKPhJ_G0035507	sense intronic lncRNA gene	Chr3:97537069-97540826 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035319	sense intronic lncRNA gene	Chr3:98542038-98545892 (-)
WSB/EiJ	MGP_WSBEiJ_G0036014	sense intronic lncRNA gene	Chr3:100997134-101000778 (-)

Homology

• Gene Tree
  Gm43462
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105561 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105561	Ensembl Gene Model | MGI Sequence Detail	3648	C57BL/6J
transcript	ENSMUST00000200265	Ensembl | MGI Sequence Detail	3648	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;