Gm43463 Gene Detail

Summary

• Symbol
  Gm43463
• Name
  predicted gene 43463

• Feature Type
  lncRNA gene
• IDs
  MGI:5663600
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:100585608-100587410 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663600	lncRNA gene	Chr3:100585608-100587410 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036961	sense intronic lncRNA gene	Chr3:101800427-101802229 (-)
A/J	MGP_AJ_G0036949	sense intronic lncRNA gene	Chr3:98592412-98594215 (-)
AKR/J	MGP_AKRJ_G0036896	sense intronic lncRNA gene	Chr3:100982440-100984243 (-)
BALB/cJ	MGP_BALBcJ_G0036940	sense intronic lncRNA gene	Chr3:98354284-98356087 (-)
C3H/HeJ	MGP_C3HHeJ_G0036626	sense intronic lncRNA gene	Chr3:101299683-101301527 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037452	sense intronic lncRNA gene	Chr3:105533408-105535210 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034507	sense intronic lncRNA gene	Chr3:94799135-94800922 (-)
CAST/EiJ	MGP_CASTEiJ_G0035815	sense intronic lncRNA gene	Chr3:100405200-100408359 (-)
CBA/J	MGP_CBAJ_G0036601	sense intronic lncRNA gene	Chr3:109148985-109150788 (-)
DBA/2J	MGP_DBA2J_G0036776	sense intronic lncRNA gene	Chr3:97833435-97835238 (-)
FVB/NJ	MGP_FVBNJ_G0036726	sense intronic lncRNA gene	Chr3:95767697-95769499 (-)
LP/J	MGP_LPJ_G0036824	sense intronic lncRNA gene	Chr3:103163563-103165365 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036734	sense intronic lncRNA gene	Chr3:115398402-115400205 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037570	sense intronic lncRNA gene	Chr3:100494403-100496206 (-)
PWK/PhJ	MGP_PWKPhJ_G0035508	sense intronic lncRNA gene	Chr3:97587741-97589540 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035320	sense intronic lncRNA gene	Chr3:98594310-98596097 (-)
WSB/EiJ	MGP_WSBEiJ_G0036015	sense intronic lncRNA gene	Chr3:101050969-101052774 (-)

Homology

• Gene Tree
  Gm43463
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106184 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106184	Ensembl Gene Model | MGI Sequence Detail	1803	C57BL/6J
transcript	ENSMUST00000195967	Ensembl | MGI Sequence Detail	1803	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;