Gm43554 Pseudogene Detail

Summary

• Symbol
  Gm43554
• Name
  predicted gene 43554

• Feature Type
  pseudogene
• IDs
  MGI:5663691
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:95994183-95994368 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663691	pseudogene	Chr3:95994183-95994368 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012297	pseudogene	Chr3:96894521-96894706 (+)
A/J	MGP_AJ_G0012291	pseudogene	Chr3:93846906-93847091 (+)
AKR/J	MGP_AKRJ_G0012258	pseudogene	Chr3:96049120-96049305 (+)
BALB/cJ	MGP_BALBcJ_G0012274	pseudogene	Chr3:93629781-93629966 (+)
C3H/HeJ	MGP_C3HHeJ_G0012140	pseudogene	Chr3:96337363-96337548 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012586	pseudogene	Chr3:100444651-100444836 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009733	pseudogene	Chr11:111029192-111030870 (-)
CAST/EiJ	MGP_CASTEiJ_G0011912	pseudogene	Chr3:95623729-95623914 (+)
CBA/J	MGP_CBAJ_G0012118	pseudogene	Chr3:104125948-104126133 (+)
DBA/2J	MGP_DBA2J_G0012174	pseudogene	Chr3:93144342-93144527 (+)
FVB/NJ	MGP_FVBNJ_G0012176	pseudogene	Chr3:91220000-91220185 (+)
LP/J	MGP_LPJ_G0012244	pseudogene	Chr3:98200901-98201209 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012180	pseudogene	Chr3:110227944-110228129 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012591	pseudogene	Chr3:95682032-95682217 (+)
PWK/PhJ	MGP_PWKPhJ_G0011757	pseudogene	Chr3:93038534-93038719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010285	pseudogene	Chr11:117791834-117793529 (-)
WSB/EiJ	MGP_WSBEiJ_G0011943	pseudogene	Chr3:96080251-96080436 (+)

Homology

• Gene Tree
  Gm43554
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43554
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105995 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105995	Ensembl Gene Model | MGI Sequence Detail	186	C57BL/6J
transcript	ENSMUST00000199987	Ensembl | MGI Sequence Detail	186	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm43554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30677	Chr3:95994002-95994047 (+)	-158 bp