Gm43561 Pseudogene Detail

Summary

• Symbol
  Gm43561
• Name
  predicted gene 43561

• Feature Type
  pseudogene
• IDs
  MGI:5663698
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:144972184-144972631 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663698	pseudogene	Chr5:144972184-144972631 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013290	pseudogene	Chr5:143971926-143972373 (-)
AKR/J	MGP_AKRJ_G0013254	pseudogene	Chr5:148456462-148456910 (-)
BALB/cJ	MGP_BALBcJ_G0013268	pseudogene	Chr5:145245469-145245916 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012838	pseudogene	Chr5:148830720-148831169 (-)
CBA/J	MGP_CBAJ_G0013085	pseudogene	Chr5:162360806-162361254 (-)
DBA/2J	MGP_DBA2J_G0013169	pseudogene	Chr5:143705595-143706042 (-)
FVB/NJ	MGP_FVBNJ_G0013167	pseudogene	Chr5:142927893-142928340 (-)
LP/J	MGP_LPJ_G0013236	pseudogene	Chr5:151021620-151022068 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013186	pseudogene	Chr5:164675605-164676052 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013640	pseudogene	Chr5:148361399-148361846 (-)
PWK/PhJ	MGP_PWKPhJ_G0012653	pseudogene	Chr5:142839121-142839630 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012441	pseudogene	Chr5:146091659-146092178 (-)
WSB/EiJ	MGP_WSBEiJ_G0012878	pseudogene	Chr5:149139721-149140152 (-)

Homology

• Gene Tree
  Gm43561
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000105024 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105024	Ensembl Gene Model | MGI Sequence Detail	448	C57BL/6J
transcript	ENSMUST00000199866	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;