Gm43563 Pseudogene Detail

Summary

• Symbol
  Gm43563
• Name
  predicted gene 43563

• Feature Type
  pseudogene
• IDs
  MGI:5663700
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:144956988-144957828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663700	pseudogene	Chr5:144956988-144957828 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040417	pseudogene	Chr5:150438493-150439265 (+)
A/J	MGP_AJ_G0040395	pseudogene	Chr5:143950202-143953045 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040024	pseudogene	Chr5:149238190-149240180 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041015	pseudogene	Chr5:155906318-155918821 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037371	pseudogene	Chr5:137701513-137702344 (-)
CAST/EiJ	MGP_CASTEiJ_G0039089	pseudogene	Chr5:148853137-148853976 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040144	pseudogene	Chr5:142887047-142920531 (+)
LP/J	MGP_LPJ_G0040236	pseudogene	Chr5:151009977-151011624 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041092	pseudogene	Chr5:148346264-148347104 (+)
PWK/PhJ	MGP_PWKPhJ_G0038773	pseudogene	Chr5:142826738-142863756 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038482	pseudogene	Chr5:146063358-146064199 (-)
WSB/EiJ	MGP_WSBEiJ_G0039331	pseudogene	Chr5:149125155-149127257 (-)

Homology

• Gene Tree
  Gm43563
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000105177 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105177	Ensembl Gene Model | MGI Sequence Detail	841	C57BL/6J
transcript	ENSMUST00000196761	Ensembl | MGI Sequence Detail	198	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;