Gm43572 Gene Detail

Summary

• Symbol
  Gm43572
• Name
  predicted gene 43572

• Feature Type
  lncRNA gene
• IDs
  MGI:5663709
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:148711132-148713079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663709	lncRNA gene	Chr3:148711132-148713079 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015529	unclassified non-coding RNA gene	Chr3:152624909-152626855 (+)
A/J	MGP_AJ_G0015506	unclassified non-coding RNA gene	Chr3:147136732-147138677 (+)
AKR/J	MGP_AKRJ_G0015470	unclassified non-coding RNA gene	Chr3:151087142-151089088 (+)
BALB/cJ	MGP_BALBcJ_G0015468	unclassified non-coding RNA gene	Chr3:146970461-146972406 (+)
C3H/HeJ	MGP_C3HHeJ_G0015291	unclassified non-coding RNA gene	Chr3:151434255-151436200 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015922	unclassified non-coding RNA gene	Chr3:157741635-157743582 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013657	unclassified non-coding RNA gene	Chr3:142105395-142107330 (+)
CAST/EiJ	MGP_CASTEiJ_G0014845	unclassified non-coding RNA gene	Chr3:151417090-151419042 (+)
CBA/J	MGP_CBAJ_G0015272	unclassified non-coding RNA gene	Chr3:163287594-163289540 (+)
DBA/2J	MGP_DBA2J_G0015366	unclassified non-coding RNA gene	Chr3:146271620-146273566 (+)
FVB/NJ	MGP_FVBNJ_G0015373	unclassified non-coding RNA gene	Chr3:143674479-143676425 (+)
LP/J	MGP_LPJ_G0015445	unclassified non-coding RNA gene	Chr3:154003867-154005813 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015397	unclassified non-coding RNA gene	Chr3:171628331-171630277 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015963	unclassified non-coding RNA gene	Chr3:150674632-150676577 (+)
PWK/PhJ	MGP_PWKPhJ_G0014631	unclassified non-coding RNA gene	Chr3:146153165-146155110 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014419	unclassified non-coding RNA gene	Chr3:148828517-148830458 (+)
WSB/EiJ	MGP_WSBEiJ_G0014951	unclassified non-coding RNA gene	Chr3:151648170-151650116 (+)

Homology

• Gene Tree
  Gm43572
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105876 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105876	Ensembl Gene Model | MGI Sequence Detail	1948	C57BL/6J
transcript	ENSMUST00000196494	Ensembl | MGI Sequence Detail	519	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;