Gm43581 Gene Detail

Summary

• Symbol
  Gm43581
• Name
  predicted gene 43581

• Feature Type
  lncRNA gene
• IDs
  MGI:5663718
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104550310-104553173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663718	lncRNA gene	Chr3:104550310-104553173 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036990	sense intronic lncRNA gene	Chr3:105951978-105954835 (+)
A/J	MGP_AJ_G0036979	sense intronic lncRNA gene	Chr3:102585291-102588154 (+)
AKR/J	MGP_AKRJ_G0036926	sense intronic lncRNA gene	Chr3:105105963-105108825 (+)
BALB/cJ	MGP_BALBcJ_G0036969	sense intronic lncRNA gene	Chr3:102360559-102363411 (+)
C3H/HeJ	MGP_C3HHeJ_G0036656	sense intronic lncRNA gene	Chr3:105479127-105481979 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037482	sense intronic lncRNA gene	Chr3:109919936-109922792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034534	sense intronic lncRNA gene	Chr3:98696594-98699638 (+)
CAST/EiJ	MGP_CASTEiJ_G0035844	sense intronic lncRNA gene	Chr3:104592745-104595606 (+)
CBA/J	MGP_CBAJ_G0036631	sense intronic lncRNA gene	Chr3:113653089-113655943 (+)
DBA/2J	MGP_DBA2J_G0036806	sense intronic lncRNA gene	Chr3:101837738-101840588 (+)
FVB/NJ	MGP_FVBNJ_G0036756	sense intronic lncRNA gene	Chr3:99759905-99762767 (+)
LP/J	MGP_LPJ_G0036853	sense intronic lncRNA gene	Chr3:107320636-107323496 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036764	sense intronic lncRNA gene	Chr3:119783081-119785939 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037600	sense intronic lncRNA gene	Chr3:104666834-104669689 (+)
PWK/PhJ	MGP_PWKPhJ_G0035536	sense intronic lncRNA gene	Chr3:101616419-101619359 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035345	sense intronic lncRNA gene	Chr3:102715677-102718423 (+)
WSB/EiJ	MGP_WSBEiJ_G0036044	sense intronic lncRNA gene	Chr3:105229048-105231907 (+)

Homology

• Gene Tree
  Gm43581
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105199 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105199	Ensembl Gene Model | MGI Sequence Detail	2864	C57BL/6J
transcript	ENSMUST00000196766	Ensembl | MGI Sequence Detail	2864	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;