Gm43583 Pseudogene Detail

Summary

• Symbol
  Gm43583
• Name
  predicted gene 43583

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5663720
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:69063169-69063471 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663720	pseudogenic gene segment	Chr6:69063169-69063471 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000269	pseudogenic gene segment	Chr6:69373108-69373410 (+)
A/J	MGP_AJ_G0000243	pseudogenic gene segment	Chr6:66450858-66451160 (+)
AKR/J	MGP_AKRJ_G0000245	pseudogenic gene segment	Chr6:68600128-68600426 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000359	pseudogenic gene segment	Chr6:71381107-71381408 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0000231	pseudogenic gene segment	Chr6:66318757-66319058 (+)
FVB/NJ	MGP_FVBNJ_G0000233	pseudogenic gene segment	Chr6:65454298-65454600 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0000332	pseudogenic gene segment	Chr6:68471402-68471704 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm43583
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10

• Ensembl
  ENSMUSG00000105313 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105313	Ensembl Gene Model | MGI Sequence Detail	303	C57BL/6J
transcript	ENSMUST00000199235	Ensembl | MGI Sequence Detail	303	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;