Gm43584 Gene Detail

Summary

• Symbol
  Gm43584
• Name
  predicted gene 43584

• Feature Type
  lncRNA gene
• IDs
  MGI:5663721
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104660439-104680586 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663721	lncRNA gene	Chr3:104660439-104680586 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015515	unclassified non-coding RNA gene	Chr3:106075435-106096627 (-)
A/J	MGP_AJ_G0015492	unclassified non-coding RNA gene	Chr3:102695007-102715186 (-)
AKR/J	MGP_AKRJ_G0015456	unclassified non-coding RNA gene	Chr3:105218994-105241475 (-)
BALB/cJ	MGP_BALBcJ_G0015454	unclassified non-coding RNA gene	Chr3:102480341-102500288 (-)
C3H/HeJ	MGP_C3HHeJ_G0015277	unclassified non-coding RNA gene	Chr3:105598567-105622900 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015908	unclassified non-coding RNA gene	Chr3:110040049-110060656 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014831	unclassified non-coding RNA gene	Chr3:104715960-104738080 (-)
CBA/J	MGP_CBAJ_G0015258	unclassified non-coding RNA gene	Chr3:113785140-113805153 (-)
DBA/2J	MGP_DBA2J_G0015352	unclassified non-coding RNA gene	Chr3:101948874-101969141 (-)
FVB/NJ	MGP_FVBNJ_G0015359	unclassified non-coding RNA gene	Chr3:99868821-99890446 (-)
LP/J	MGP_LPJ_G0015431	unclassified non-coding RNA gene	Chr3:107447577-107476289 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015383	unclassified non-coding RNA gene	Chr3:119907084-119928123 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015949	unclassified non-coding RNA gene	Chr3:104781678-104801797 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014937	unclassified non-coding RNA gene	Chr3:105357926-105378982 (-)

Homology

• Gene Tree
  Gm43584
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000105195 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105195	Ensembl Gene Model | MGI Sequence Detail	20148	C57BL/6J
transcript	ENSMUST00000199762	Ensembl | MGI Sequence Detail	605	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;