Gm43604 Gene Detail

Summary

• Symbol
  Gm43604
• Name
  predicted gene 43604

• Feature Type
  lncRNA gene
• IDs
  MGI:5663741
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:136149820-136150524 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663741	lncRNA gene	Chr5:136149820-136150524 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004202	antisense lncRNA gene	Chr5:140746131-140746835 (-)
A/J	MGP_AJ_G0004181	antisense lncRNA gene	Chr5:134686967-134687671 (-)
AKR/J	MGP_AKRJ_G0004162	antisense lncRNA gene	Chr5:139039826-139040530 (-)
BALB/cJ	MGP_BALBcJ_G0004167	antisense lncRNA gene	Chr5:136044751-136045455 (-)
C3H/HeJ	MGP_C3HHeJ_G0004115	antisense lncRNA gene	Chr5:139660710-139661414 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004315	antisense lncRNA gene	Chr5:145981549-145982253 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003791	antisense lncRNA gene	Chr5:128972905-128973624 (-)
CAST/EiJ	MGP_CASTEiJ_G0004077	antisense lncRNA gene	Chr5:139060076-139060783 (-)
CBA/J	MGP_CBAJ_G0004109	antisense lncRNA gene	Chr5:151686340-151687044 (-)
DBA/2J	MGP_DBA2J_G0004125	antisense lncRNA gene	Chr5:134587596-134588300 (-)
FVB/NJ	MGP_FVBNJ_G0004141	antisense lncRNA gene	Chr5:133741119-133741823 (-)
LP/J	MGP_LPJ_G0004203	antisense lncRNA gene	Chr5:141172653-141173357 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004131	antisense lncRNA gene	Chr5:154657495-154658199 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004313	antisense lncRNA gene	Chr5:138857335-138858039 (-)
PWK/PhJ	MGP_PWKPhJ_G0004031	antisense lncRNA gene	Chr5:133646471-133647178 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003974	antisense lncRNA gene	Chr5:136405959-136406663 (-)
WSB/EiJ	MGP_WSBEiJ_G0004113	antisense lncRNA gene	Chr5:139579925-139580629 (-)

Homology

• Gene Tree
  Gm43604
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105349 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105349	Ensembl Gene Model | MGI Sequence Detail	705	C57BL/6J
transcript	ENSMUST00000199799	Ensembl | MGI Sequence Detail	705	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;