Gm43613 Gene Detail

Summary

• Symbol
  Gm43613
• Name
  predicted gene 43613

• Feature Type
  lncRNA gene
• IDs
  MGI:5663750
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:143036181-143037793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663750	lncRNA gene	Chr3:143036181-143037793 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006338	lincRNA gene	Chr3:146565831-146567462 (+)
A/J	MGP_AJ_G0006331	lincRNA gene	Chr3:141378951-141380629 (+)
AKR/J	MGP_AKRJ_G0006306	lincRNA gene	Chr3:145135857-145137489 (+)
BALB/cJ	MGP_BALBcJ_G0006305	lincRNA gene	Chr3:141184214-141185846 (+)
C3H/HeJ	MGP_C3HHeJ_G0006256	lincRNA gene	Chr3:145463546-145465511 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006470	lincRNA gene	Chr3:151649893-151651505 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005765	lincRNA gene	Chr3:136568081-136569745 (+)
CAST/EiJ	MGP_CASTEiJ_G0006190	lincRNA gene	Chr3:145435810-145437431 (+)
CBA/J	MGP_CBAJ_G0006239	lincRNA gene	Chr3:156895114-156896727 (+)
DBA/2J	MGP_DBA2J_G0006260	lincRNA gene	Chr3:140544095-140545721 (+)
FVB/NJ	MGP_FVBNJ_G0006282	lincRNA gene	Chr3:137957535-137959173 (+)
LP/J	MGP_LPJ_G0006342	lincRNA gene	Chr3:147990744-147992377 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006272	lincRNA gene	Chr3:165210912-165214000 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006476	lincRNA gene	Chr3:144749800-144751442 (+)
PWK/PhJ	MGP_PWKPhJ_G0006127	lincRNA gene	Chr3:140352801-140354500 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006040	lincRNA gene	Chr3:142907989-142909616 (+)
WSB/EiJ	MGP_WSBEiJ_G0006236	lincRNA gene	Chr3:145636626-145638226 (+)

Homology

• Gene Tree
  Gm43613
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106162 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106162	Ensembl Gene Model | MGI Sequence Detail	1613	C57BL/6J
transcript	ENSMUST00000199409	Ensembl | MGI Sequence Detail	1613	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;