Gm43614 Gene Detail

Summary

• Symbol
  Gm43614
• Name
  predicted gene 43614

• Feature Type
  lncRNA gene
• IDs
  MGI:5663751
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:142813709-142863664 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  1389 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663751	lncRNA gene	Chr3:142813709-142863664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006336	lincRNA gene	Chr3:146333145-146386245 (+)
A/J	MGP_AJ_G0006329	lincRNA gene	Chr3:141152474-141203684 (+)
AKR/J	MGP_AKRJ_G0006304	lincRNA gene	Chr3:144909736-144960544 (+)
BALB/cJ	MGP_BALBcJ_G0006303	lincRNA gene	Chr3:140961834-141011648 (+)
C3H/HeJ	MGP_C3HHeJ_G0006254	lincRNA gene	Chr3:145232201-145285982 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006468	lincRNA gene	Chr3:151407438-151458682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005763	lincRNA gene	Chr3:136360013-136406379 (+)
CAST/EiJ	MGP_CASTEiJ_G0006188	lincRNA gene	Chr3:145208298-145265054 (+)
CBA/J	MGP_CBAJ_G0006237	lincRNA gene	Chr3:156659939-156710641 (+)
DBA/2J	MGP_DBA2J_G0006258	lincRNA gene	Chr3:140322547-140374440 (+)
FVB/NJ	MGP_FVBNJ_G0006280	lincRNA gene	Chr3:137740290-137789294 (+)
LP/J	MGP_LPJ_G0006340	lincRNA gene	Chr3:147757430-147811613 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006270	lincRNA gene	Chr3:164970621-165030912 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006474	lincRNA gene	Chr3:144530737-144578517 (+)
PWK/PhJ	MGP_PWKPhJ_G0006125	lincRNA gene	Chr3:140126277-140174819 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006038	lincRNA gene	Chr3:142683540-142735693 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm43614
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106052 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106052	Ensembl Gene Model | MGI Sequence Detail	49956	C57BL/6J
transcript	ENSMUST00000197030	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;