Gm43616 Gene Detail

Summary

• Symbol
  Gm43616
• Name
  predicted gene 43616

• Feature Type
  lncRNA gene
• IDs
  MGI:5663753
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:143281294-143282762 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663753	lncRNA gene	Chr3:143281294-143282762 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006341	lincRNA gene	Chr3:146830996-146832464 (-)
A/J	MGP_AJ_G0006334	lincRNA gene	Chr3:141633540-141635008 (-)
AKR/J	MGP_AKRJ_G0006309	lincRNA gene	Chr3:145403227-145404695 (-)
BALB/cJ	MGP_BALBcJ_G0006308	lincRNA gene	Chr3:141439467-141440935 (-)
C3H/HeJ	MGP_C3HHeJ_G0006259	lincRNA gene	Chr3:145723861-145725329 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006473	lincRNA gene	Chr3:151912769-151914237 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005768	lincRNA gene	Chr3:136806422-136807894 (-)
CAST/EiJ	MGP_CASTEiJ_G0006193	lincRNA gene	Chr3:145690938-145692402 (-)
CBA/J	MGP_CBAJ_G0006242	lincRNA gene	Chr3:157152220-157153684 (-)
DBA/2J	MGP_DBA2J_G0006263	lincRNA gene	Chr3:140805399-140806867 (-)
FVB/NJ	MGP_FVBNJ_G0006285	lincRNA gene	Chr3:138205564-138207027 (-)
LP/J	MGP_LPJ_G0006345	lincRNA gene	Chr3:148259280-148260748 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006275	lincRNA gene	Chr3:165502369-165503833 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006479	lincRNA gene	Chr3:145017866-145019334 (-)
PWK/PhJ	MGP_PWKPhJ_G0006130	lincRNA gene	Chr3:140607154-140608618 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006043	lincRNA gene	Chr3:143154657-143156120 (-)
WSB/EiJ	MGP_WSBEiJ_G0006239	lincRNA gene	Chr3:145904237-145905699 (-)

Homology

• Gene Tree
  Gm43616
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105000 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105000	Ensembl Gene Model | MGI Sequence Detail	1469	C57BL/6J
transcript	ENSMUST00000199347	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;