Gm43625 Gene Detail

Summary

• Symbol
  Gm43625
• Name
  predicted gene 43625

• Feature Type
  lncRNA gene
• IDs
  MGI:5663762
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:146140061-146141599 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663762	lncRNA gene	Chr5:146140061-146141599 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006854	lincRNA gene	Chr5:151765623-151767161 (-)
A/J	MGP_AJ_G0006848	lincRNA gene	Chr5:145351963-145353501 (-)
AKR/J	MGP_AKRJ_G0006818	lincRNA gene	Chr5:149777109-149778647 (-)
BALB/cJ	MGP_BALBcJ_G0006824	lincRNA gene	Chr5:146560903-146562441 (-)
C3H/HeJ	MGP_C3HHeJ_G0006769	lincRNA gene	Chr5:150728402-150729940 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006989	lincRNA gene	Chr5:157342035-157343573 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006240	lincRNA gene	Chr5:139770441-139771982 (-)
CAST/EiJ	MGP_CASTEiJ_G0006688	lincRNA gene	Chr5:150233923-150235462 (-)
CBA/J	MGP_CBAJ_G0006751	lincRNA gene	Chr5:163868553-163870091 (-)
DBA/2J	MGP_DBA2J_G0006771	lincRNA gene	Chr5:145008489-145010027 (-)
FVB/NJ	MGP_FVBNJ_G0006794	lincRNA gene	Chr5:144226334-144227981 (-)
LP/J	MGP_LPJ_G0006854	lincRNA gene	Chr5:152446778-152448316 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006776	lincRNA gene	Chr5:166232747-166235159 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006991	lincRNA gene	Chr5:149694949-149696487 (-)
PWK/PhJ	MGP_PWKPhJ_G0006630	lincRNA gene	Chr5:144099638-144101311 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006537	lincRNA gene	Chr5:146944784-146946337 (-)
WSB/EiJ	MGP_WSBEiJ_G0006742	lincRNA gene	Chr5:150498142-150501017 (-)

Homology

• Gene Tree
  Gm43625
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105636 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105636	Ensembl Gene Model | MGI Sequence Detail	1539	C57BL/6J
transcript	ENSMUST00000199177	Ensembl | MGI Sequence Detail	1539	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;