Gm43629 Pseudogene Detail

Summary

• Symbol
  Gm43629
• Name
  predicted gene 43629

• Feature Type
  pseudogene
• IDs
  MGI:5663766
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:22804625-22805328 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663766	pseudogene	Chr6:22804625-22805328 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013390	pseudogene	Chr6:20311513-20312207 (-)
A/J	MGP_AJ_G0013373	pseudogene	Chr6:19472941-19473644 (-)
AKR/J	MGP_AKRJ_G0013333	pseudogene	Chr6:20107637-20108341 (-)
BALB/cJ	MGP_BALBcJ_G0013351	pseudogene	Chr6:19568534-19569227 (-)
C3H/HeJ	MGP_C3HHeJ_G0013199	pseudogene	Chr6:20062450-20063153 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013725	pseudogene	Chr6:20949928-20950630 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011837	pseudogene	Chr6:18056684-18057382 (-)
CAST/EiJ	MGP_CASTEiJ_G0012912	pseudogene	Chr6:19969528-19970223 (-)
CBA/J	MGP_CBAJ_G0013169	pseudogene	Chr6:21652281-21652983 (-)
DBA/2J	MGP_DBA2J_G0013253	pseudogene	Chr6:19396542-19397234 (-)
FVB/NJ	MGP_FVBNJ_G0013250	pseudogene	Chr6:19179079-19179778 (-)
LP/J	MGP_LPJ_G0013321	pseudogene	Chr6:20444510-20445209 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013267	pseudogene	Chr6:23499594-23500288 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013724	pseudogene	Chr6:20061698-20062391 (-)
PWK/PhJ	MGP_PWKPhJ_G0012725	pseudogene	Chr6:19014317-19015016 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012507	pseudogene	Chr6:19790573-19791278 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm43629
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107059 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107059	Ensembl Gene Model | MGI Sequence Detail	704	C57BL/6J
transcript	ENSMUST00000201782	Ensembl | MGI Sequence Detail	704	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;