Gm43630 Pseudogene Detail

Summary

• Symbol
  Gm43630
• Name
  predicted gene 43630

• Feature Type
  pseudogene
• IDs
  MGI:5663767
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:22622917-22623692 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663767	pseudogene	Chr6:22622917-22623692 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013386	pseudogene	Chr6:20135934-20136709 (+)
A/J	MGP_AJ_G0013369	pseudogene	Chr6:19309965-19310740 (+)
AKR/J	MGP_AKRJ_G0013329	pseudogene	Chr6:19930877-19931652 (+)
BALB/cJ	MGP_BALBcJ_G0013348	pseudogene	Chr6:19406550-19407325 (+)
C3H/HeJ	MGP_C3HHeJ_G0013196	pseudogene	Chr6:19878166-19878941 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013721	pseudogene	Chr6:20744262-20745037 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011835	pseudogene	Chr6:17911227-17912008 (+)
CAST/EiJ	MGP_CASTEiJ_G0012909	pseudogene	Chr6:19827012-19827792 (+)
CBA/J	MGP_CBAJ_G0013166	pseudogene	Chr6:21463564-21464339 (+)
DBA/2J	MGP_DBA2J_G0013249	pseudogene	Chr6:19219284-19220059 (+)
FVB/NJ	MGP_FVBNJ_G0013246	pseudogene	Chr6:19015244-19016019 (+)
LP/J	MGP_LPJ_G0013317	pseudogene	Chr6:20263928-20264703 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013264	pseudogene	Chr6:23278965-23279740 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013721	pseudogene	Chr6:19915125-19915900 (+)
PWK/PhJ	MGP_PWKPhJ_G0012723	pseudogene	Chr6:18844625-18845405 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012505	pseudogene	Chr6:19629124-19629904 (+)
WSB/EiJ	MGP_WSBEiJ_G0012951	pseudogene	Chr6:19771933-19772708 (+)

Homology

• Gene Tree
  Gm43630
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107282 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107282	Ensembl Gene Model | MGI Sequence Detail	776	C57BL/6J
transcript	ENSMUST00000201550	Ensembl | MGI Sequence Detail	776	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;