Gm43634 Gene Detail

Summary

• Symbol
  Gm43634
• Name
  predicted gene 43634

• Feature Type
  lncRNA gene
• IDs
  MGI:5663771
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:127621403-127634888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  490 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663771	lncRNA gene	Chr6:127621403-127634888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007068	lincRNA gene	Chr6:131177464-131191020 (+)
A/J	MGP_AJ_G0007064	lincRNA gene	Chr6:126166274-126179739 (+)
AKR/J	MGP_AKRJ_G0007033	lincRNA gene	Chr6:129571379-129584928 (+)
BALB/cJ	MGP_BALBcJ_G0007039	lincRNA gene	Chr6:125728694-125742879 (+)
C3H/HeJ	MGP_C3HHeJ_G0006984	lincRNA gene	Chr6:129713321-129727717 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007205	lincRNA gene	Chr6:134604865-134619646 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006431	lincRNA gene	Chr6:123340467-123354322 (+)
CAST/EiJ	MGP_CASTEiJ_G0006895	lincRNA gene	Chr6:129938586-129953619 (+)
CBA/J	MGP_CBAJ_G0006964	lincRNA gene	Chr6:139771140-139784794 (+)
DBA/2J	MGP_DBA2J_G0006986	lincRNA gene	Chr6:125056049-125070024 (+)
FVB/NJ	MGP_FVBNJ_G0007010	lincRNA gene	Chr6:123976228-123993652 (+)
LP/J	MGP_LPJ_G0007071	lincRNA gene	Chr6:131269331-131285281 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006990	lincRNA gene	Chr6:143685265-143698788 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007210	lincRNA gene	Chr6:129550873-129565580 (+)
PWK/PhJ	MGP_PWKPhJ_G0006835	lincRNA gene	Chr6:123337365-123351215 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006745	lincRNA gene	Chr6:127645941-127660637 (+)
WSB/EiJ	MGP_WSBEiJ_G0006953	lincRNA gene	Chr6:129921787-129935229 (+)

Homology

• Gene Tree
  Gm43634
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107253 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107253	Ensembl Gene Model | MGI Sequence Detail	13486	C57BL/6J
transcript	ENSMUST00000202671	Ensembl | MGI Sequence Detail	675	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;