Gm43647 Gene Detail

Summary

• Symbol
  Gm43647
• Name
  predicted gene 43647

• Feature Type
  lncRNA gene
• IDs
  MGI:5663784
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54130987-54199088 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  835 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663784	lncRNA gene	Chr14:54130987-54199088 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003243	antisense lncRNA gene	Chr14:47854053-47880717 (-)
A/J	MGP_AJ_G0003219	antisense lncRNA gene	Chr14:46947304-46978760 (-)
AKR/J	MGP_AKRJ_G0003202	antisense lncRNA gene	Chr14:48646412-48673080 (-)
BALB/cJ	MGP_BALBcJ_G0003208	antisense lncRNA gene	Chr14:46914799-46942268 (-)
C3H/HeJ	MGP_C3HHeJ_G0003161	antisense lncRNA gene	Chr14:48324715-48351439 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003350	antisense lncRNA gene	Chr14:50284714-50323198 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002875	antisense lncRNA gene	Chr14:45375742-45401906 (-)
CAST/EiJ	MGP_CASTEiJ_G0003127	antisense lncRNA gene	Chr14:44568571-44595203 (-)
CBA/J	MGP_CBAJ_G0003158	antisense lncRNA gene	Chr14:51782877-51809541 (-)
DBA/2J	MGP_DBA2J_G0003163	antisense lncRNA gene	Chr14:46678351-46705831 (-)
FVB/NJ	MGP_FVBNJ_G0003182	antisense lncRNA gene	Chr14:46152789-46179451 (-)
LP/J	MGP_LPJ_G0003240	antisense lncRNA gene	Chr14:48870051-48900238 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003171	antisense lncRNA gene	Chr14:51246325-51272988 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003352	antisense lncRNA gene	Chr14:47831762-47858431 (-)
PWK/PhJ	MGP_PWKPhJ_G0003085	antisense lncRNA gene	Chr14:43219085-43245954 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003031	antisense lncRNA gene	Chr14:43807907-43835247 (-)
WSB/EiJ	MGP_WSBEiJ_G0003161	antisense lncRNA gene	Chr14:48126825-48154798 (-)

Homology

• Gene Tree
  Gm43647
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000105963 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105963	Ensembl Gene Model | MGI Sequence Detail	68102	C57BL/6J
transcript	ENSMUST00000244883	Ensembl | MGI Sequence Detail	1627	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43647:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128531	Chr14:54199051-54199091 (-)	17 bp