Gm43653 Gene Detail

Summary

• Symbol
  Gm43653
• Name
  predicted gene 43653

• Feature Type
  lncRNA gene
• IDs
  MGI:5663790
  NCBI Gene: 115489703
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:127630560-127632293 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663790	lncRNA gene	Chr3:127630560-127634724 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003834	antisense lncRNA gene	Chr3:130350175-130351917 (+)
A/J	MGP_AJ_G0003814	antisense lncRNA gene	Chr3:125881814-125883556 (+)
AKR/J	MGP_AKRJ_G0003791	antisense lncRNA gene	Chr3:129137453-129139186 (+)
BALB/cJ	MGP_BALBcJ_G0003801	antisense lncRNA gene	Chr3:125742827-125744567 (+)
C3H/HeJ	MGP_C3HHeJ_G0003748	antisense lncRNA gene	Chr3:129514605-129516347 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003944	antisense lncRNA gene	Chr3:135048611-135050344 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003446	antisense lncRNA gene	Chr3:121126164-121127862 (+)
CAST/EiJ	MGP_CASTEiJ_G0003713	antisense lncRNA gene	Chr3:129083279-129085011 (+)
CBA/J	MGP_CBAJ_G0003742	antisense lncRNA gene	Chr3:139617541-139619283 (+)
DBA/2J	MGP_DBA2J_G0003755	antisense lncRNA gene	Chr3:125098060-125099793 (+)
FVB/NJ	MGP_FVBNJ_G0003776	antisense lncRNA gene	Chr3:122684498-122686231 (+)
LP/J	MGP_LPJ_G0003836	antisense lncRNA gene	Chr3:131900520-131905088 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003763	antisense lncRNA gene	Chr3:147560951-147562684 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003945	antisense lncRNA gene	Chr3:128786175-128787908 (+)
PWK/PhJ	MGP_PWKPhJ_G0003668	antisense lncRNA gene	Chr3:124833642-124835912 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003613	antisense lncRNA gene	Chr3:126855061-126856771 (+)
WSB/EiJ	MGP_WSBEiJ_G0003749	antisense lncRNA gene	Chr3:129504292-129506015 (+)

Homology

• Gene Tree
  Gm43653
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105447 (Evidence)
• NCBI Gene
  115489703

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105447	Ensembl Gene Model | MGI Sequence Detail	1734	C57BL/6J
transcript	ENSMUST00000198136	Ensembl | MGI Sequence Detail	1608	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;