Gm43666 Gene Detail

Summary

• Symbol
  Gm43666
• Name
  predicted gene 43666

• Feature Type
  lncRNA gene
• IDs
  MGI:5663803
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:33757504-33813765 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  1512 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663803	lncRNA gene	Chr3:33757504-33813765 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006146	lincRNA gene	Chr3:31335244-31393510 (-)
A/J	MGP_AJ_G0006137	lincRNA gene	Chr3:30870952-30926612 (-)
AKR/J	MGP_AKRJ_G0006113	lincRNA gene	Chr3:31380007-31446232 (-)
BALB/cJ	MGP_BALBcJ_G0006114	lincRNA gene	Chr3:30509587-30570206 (-)
C3H/HeJ	MGP_C3HHeJ_G0006063	lincRNA gene	Chr3:31413165-31476197 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006275	lincRNA gene	Chr3:32909851-32973101 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005998	lincRNA gene	Chr3:31260913-31316517 (-)
CBA/J	MGP_CBAJ_G0006048	lincRNA gene	Chr3:33763799-33834487 (-)
DBA/2J	MGP_DBA2J_G0006068	lincRNA gene	Chr3:30331896-30395156 (-)
FVB/NJ	MGP_FVBNJ_G0006092	lincRNA gene	Chr3:29780202-29837791 (-)
LP/J	MGP_LPJ_G0006149	lincRNA gene	Chr3:32111260-32174836 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006081	lincRNA gene	Chr3:36264353-36332265 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006279	lincRNA gene	Chr3:31162987-31227339 (-)
PWK/PhJ	MGP_PWKPhJ_G0005943	lincRNA gene	Chr3:29888476-29951887 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005852	lincRNA gene	Chr3:30573484-30636932 (-)
WSB/EiJ	MGP_WSBEiJ_G0006046	lincRNA gene	Chr3:31182503-31242876 (-)

Homology

• Gene Tree
  Gm43666
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104588 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104588	Ensembl Gene Model | MGI Sequence Detail	56262	C57BL/6J
transcript	ENSMUST00000197116	Ensembl | MGI Sequence Detail	2989	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;