Gm43696 Gene Detail

Summary

• Symbol
  Gm43696
• Name
  predicted gene 43696

• Feature Type
  lncRNA gene
• IDs
  MGI:5663833
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:104377976-104384046 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663833	lncRNA gene	Chr3:104377976-104384046 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036987	sense intronic lncRNA gene	Chr3:105779475-105785529 (-)
A/J	MGP_AJ_G0036976	sense intronic lncRNA gene	Chr3:102418028-102424075 (-)
AKR/J	MGP_AKRJ_G0036923	sense intronic lncRNA gene	Chr3:104932351-104938406 (-)
BALB/cJ	MGP_BALBcJ_G0036966	sense intronic lncRNA gene	Chr3:102188976-102195039 (-)
C3H/HeJ	MGP_C3HHeJ_G0036653	sense intronic lncRNA gene	Chr3:105301181-105307223 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037479	sense intronic lncRNA gene	Chr3:109711605-109717663 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034531	sense intronic lncRNA gene	Chr3:98535213-98541501 (-)
CAST/EiJ	MGP_CASTEiJ_G0035841	sense intronic lncRNA gene	Chr3:104419918-104425973 (-)
CBA/J	MGP_CBAJ_G0036628	sense intronic lncRNA gene	Chr3:113463781-113469827 (-)
DBA/2J	MGP_DBA2J_G0036803	sense intronic lncRNA gene	Chr3:101662963-101669032 (-)
FVB/NJ	MGP_FVBNJ_G0036753	sense intronic lncRNA gene	Chr3:99594350-99600415 (-)
LP/J	MGP_LPJ_G0036850	sense intronic lncRNA gene	Chr3:107135526-107141583 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036761	sense intronic lncRNA gene	Chr3:119594582-119600641 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037597	sense intronic lncRNA gene	Chr3:104492333-104498393 (-)
PWK/PhJ	MGP_PWKPhJ_G0035533	sense intronic lncRNA gene	Chr3:101449493-101455696 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035342	sense intronic lncRNA gene	Chr3:102537412-102543455 (-)
WSB/EiJ	MGP_WSBEiJ_G0036041	sense intronic lncRNA gene	Chr3:105053431-105059497 (-)

Homology

• Gene Tree
  Gm43696
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105304 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105304	Ensembl Gene Model | MGI Sequence Detail	6071	C57BL/6J
transcript	ENSMUST00000199385	Ensembl | MGI Sequence Detail	6071	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43696:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34879	Chr3:104384020-104384023 (-)	24 bp