Gm43698 Gene Detail

Summary

• Symbol
  Gm43698
• Name
  predicted gene 43698

• Feature Type
  lncRNA gene
• IDs
  MGI:5663835
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:67517686-67523946 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  379 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663835	lncRNA gene	Chr5:67517686-67523946 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006660	lincRNA gene	Chr5:67133880-67142998 (+)
A/J	MGP_AJ_G0006654	lincRNA gene	Chr5:64618773-64624962 (+)
AKR/J	MGP_AKRJ_G0006624	lincRNA gene	Chr5:66689760-66695929 (+)
BALB/cJ	MGP_BALBcJ_G0006629	lincRNA gene	Chr5:65303951-65310162 (+)
C3H/HeJ	MGP_C3HHeJ_G0006576	lincRNA gene	Chr5:67006685-67012852 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006794	lincRNA gene	Chr5:69915868-69921992 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006053	lincRNA gene	Chr5:60672580-60678743 (+)
CAST/EiJ	MGP_CASTEiJ_G0006498	lincRNA gene	Chr5:66195926-66201951 (+)
CBA/J	MGP_CBAJ_G0006557	lincRNA gene	Chr5:72148693-72154903 (+)
DBA/2J	MGP_DBA2J_G0006577	lincRNA gene	Chr5:64638777-64644994 (+)
FVB/NJ	MGP_FVBNJ_G0006601	lincRNA gene	Chr5:63812852-63818831 (+)
LP/J	MGP_LPJ_G0006661	lincRNA gene	Chr5:67626003-67633126 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006585	lincRNA gene	Chr5:74939682-74945993 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006796	lincRNA gene	Chr5:66359378-66365589 (+)
PWK/PhJ	MGP_PWKPhJ_G0006437	lincRNA gene	Chr5:63677130-63683278 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006344	lincRNA gene	Chr5:65691901-65697880 (+)
WSB/EiJ	MGP_WSBEiJ_G0006549	lincRNA gene	Chr5:66592898-66598933 (+)

Homology

• Gene Tree
  Gm43698
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43698
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000107266 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107266	Ensembl Gene Model | MGI Sequence Detail	6261	C57BL/6J
transcript	ENSMUST00000202390	Ensembl | MGI Sequence Detail	1234	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43698:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46578	Chr5:67517710-67517720 (+)	29 bp