Gm43717 Pseudogene Detail

Summary

• Symbol
  Gm43717
• Name
  predicted gene 43717

• Feature Type
  pseudogene
• IDs
  MGI:5663854
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:72883405-72883714 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663854	pseudogene	Chr5:72883405-72883714 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013134	pseudogene	Chr5:72670564-72670873 (+)
A/J	MGP_AJ_G0013117	pseudogene	Chr5:69961601-69961910 (+)
AKR/J	MGP_AKRJ_G0013083	pseudogene	Chr5:72201548-72201857 (+)
BALB/cJ	MGP_BALBcJ_G0013098	pseudogene	Chr5:70656733-70657042 (+)
C3H/HeJ	MGP_C3HHeJ_G0012943	pseudogene	Chr5:72582215-72582524 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013458	pseudogene	Chr5:75661257-75661566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011638	pseudogene	Chr5:65669417-65669726 (+)
CAST/EiJ	MGP_CASTEiJ_G0012678	pseudogene	Chr5:71675341-71675650 (+)
CBA/J	MGP_CBAJ_G0012915	pseudogene	Chr5:78096698-78097007 (+)
DBA/2J	MGP_DBA2J_G0012995	pseudogene	Chr5:70006392-70006701 (+)
FVB/NJ	MGP_FVBNJ_G0012998	pseudogene	Chr5:69179383-69179692 (+)
LP/J	MGP_LPJ_G0013068	pseudogene	Chr5:73125942-73126251 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013016	pseudogene	Chr5:81452146-81452455 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013459	pseudogene	Chr5:71773763-71774072 (+)
PWK/PhJ	MGP_PWKPhJ_G0012499	pseudogene	Chr5:68989807-68990116 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012298	pseudogene	Chr5:71109950-71110259 (+)
WSB/EiJ	MGP_WSBEiJ_G0012716	pseudogene	Chr5:72057772-72058081 (+)

Homology

• Gene Tree
  Gm43717
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43717
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105089 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105089	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000198684	Ensembl | MGI Sequence Detail	310	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17