Gm43728 Gene Detail

Summary

• Symbol
  Gm43728
• Name
  predicted gene 43728

• Feature Type
  lncRNA gene
• IDs
  MGI:5663865
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:5359002-5361623 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663865	lncRNA gene	Chr5:5359002-5361623 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037026	sense intronic lncRNA gene	Chr5:2211435-2214030 (-)
A/J	MGP_AJ_G0037014	sense intronic lncRNA gene	Chr5:2121009-2123569 (-)
AKR/J	MGP_AKRJ_G0036962	sense intronic lncRNA gene	Chr5:2134998-2137638 (-)
BALB/cJ	MGP_BALBcJ_G0037005	sense intronic lncRNA gene	Chr5:2321534-2324179 (-)
C3H/HeJ	MGP_C3HHeJ_G0036692	sense intronic lncRNA gene	Chr5:2343718-2346318 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037518	sense intronic lncRNA gene	Chr5:2581628-2584237 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034569	sense intronic lncRNA gene	Chr5:2216589-2219099 (-)
CAST/EiJ	MGP_CASTEiJ_G0035880	sense intronic lncRNA gene	Chr5:2311290-2313884 (-)
CBA/J	MGP_CBAJ_G0036667	sense intronic lncRNA gene	Chr5:2557290-2559883 (-)
DBA/2J	MGP_DBA2J_G0036842	sense intronic lncRNA gene	Chr5:2262309-2264899 (-)
FVB/NJ	MGP_FVBNJ_G0036792	sense intronic lncRNA gene	Chr5:2122845-2125333 (-)
LP/J	MGP_LPJ_G0036889	sense intronic lncRNA gene	Chr5:2299634-2302249 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036799	sense intronic lncRNA gene	Chr5:2463063-2465528 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037635	sense intronic lncRNA gene	Chr5:2215595-2218216 (-)
PWK/PhJ	MGP_PWKPhJ_G0035572	sense intronic lncRNA gene	Chr5:2191508-2194050 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035381	sense intronic lncRNA gene	Chr5:2497634-2500233 (-)
WSB/EiJ	MGP_WSBEiJ_G0036080	sense intronic lncRNA gene	Chr5:2234774-2237332 (-)

Homology

• Gene Tree
  Gm43728
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104867 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104867	Ensembl Gene Model | MGI Sequence Detail	2622	C57BL/6J
transcript	ENSMUST00000198817	Ensembl | MGI Sequence Detail	2622	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;