Gm43768 Gene Detail

Summary

• Symbol
  Gm43768
• Name
  predicted gene 43768

• Feature Type
  lncRNA gene
• IDs
  MGI:5663905
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:94483084-94484341 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663905	lncRNA gene	Chr3:94483084-94484341 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036953	sense intronic lncRNA gene	Chr3:95155442-95156696 (-)
A/J	MGP_AJ_G0036941	sense intronic lncRNA gene	Chr3:92257840-92259094 (-)
AKR/J	MGP_AKRJ_G0036888	sense intronic lncRNA gene	Chr3:94355736-94356990 (-)
BALB/cJ	MGP_BALBcJ_G0036932	sense intronic lncRNA gene	Chr3:91967130-91968384 (-)
C3H/HeJ	MGP_C3HHeJ_G0036618	sense intronic lncRNA gene	Chr3:94659736-94660990 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037444	sense intronic lncRNA gene	Chr3:98750232-98751489 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034501	sense intronic lncRNA gene	Chr3:88749403-88750631 (-)
CAST/EiJ	MGP_CASTEiJ_G0035807	sense intronic lncRNA gene	Chr3:94000463-94001721 (-)
CBA/J	MGP_CBAJ_G0036593	sense intronic lncRNA gene	Chr3:102243635-102244889 (-)
DBA/2J	MGP_DBA2J_G0036768	sense intronic lncRNA gene	Chr3:91520791-91522043 (-)
FVB/NJ	MGP_FVBNJ_G0036718	sense intronic lncRNA gene	Chr3:89617985-89619239 (-)
LP/J	MGP_LPJ_G0036816	sense intronic lncRNA gene	Chr3:96459281-96460535 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036726	sense intronic lncRNA gene	Chr3:108470804-108472058 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037562	sense intronic lncRNA gene	Chr3:94034430-94035684 (-)
PWK/PhJ	MGP_PWKPhJ_G0035500	sense intronic lncRNA gene	Chr3:91411094-91412346 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035312	sense intronic lncRNA gene	Chr3:92366549-92367807 (-)
WSB/EiJ	MGP_WSBEiJ_G0036007	sense intronic lncRNA gene	Chr3:94387666-94388919 (-)

Homology

• Gene Tree
  Gm43768
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105412 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105412	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000198380	Ensembl | MGI Sequence Detail	1258	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;