Gm43774 Gene Detail

Summary

• Symbol
  Gm43774
• Name
  predicted gene 43774

• Feature Type
  lncRNA gene
• IDs
  MGI:5663911
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:94443918-94444795 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663911	lncRNA gene	Chr3:94443918-94444795 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036952	sense intronic lncRNA gene	Chr3:95117583-95118460 (-)
A/J	MGP_AJ_G0036940	sense intronic lncRNA gene	Chr3:92224587-92225464 (-)
AKR/J	MGP_AKRJ_G0036887	sense intronic lncRNA gene	Chr3:94320822-94321699 (-)
BALB/cJ	MGP_BALBcJ_G0036931	sense intronic lncRNA gene	Chr3:91933992-91934869 (-)
C3H/HeJ	MGP_C3HHeJ_G0036617	sense intronic lncRNA gene	Chr3:94625843-94626720 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037443	sense intronic lncRNA gene	Chr3:98707228-98708105 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034500	sense intronic lncRNA gene	Chr3:88716070-88716922 (-)
CAST/EiJ	MGP_CASTEiJ_G0035806	sense intronic lncRNA gene	Chr3:93966978-93967857 (-)
CBA/J	MGP_CBAJ_G0036592	sense intronic lncRNA gene	Chr3:102206571-102207448 (-)
DBA/2J	MGP_DBA2J_G0036767	sense intronic lncRNA gene	Chr3:91488110-91488987 (-)
FVB/NJ	MGP_FVBNJ_G0036717	sense intronic lncRNA gene	Chr3:89586398-89587275 (-)
LP/J	MGP_LPJ_G0036815	sense intronic lncRNA gene	Chr3:96425047-96425924 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036725	sense intronic lncRNA gene	Chr3:108433548-108434425 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037561	sense intronic lncRNA gene	Chr3:93995445-93996322 (-)
PWK/PhJ	MGP_PWKPhJ_G0035499	sense intronic lncRNA gene	Chr3:91376314-91377191 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035311	sense intronic lncRNA gene	Chr3:92338257-92339137 (-)
WSB/EiJ	MGP_WSBEiJ_G0036006	sense intronic lncRNA gene	Chr3:94349131-94350008 (-)

Homology

• Gene Tree
  Gm43774
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104631 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104631	Ensembl Gene Model | MGI Sequence Detail	878	C57BL/6J
transcript	ENSMUST00000196327	Ensembl | MGI Sequence Detail	878	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;