Gm43777 Gene Detail

Summary

• Symbol
  Gm43777
• Name
  predicted gene 43777

• Feature Type
  lncRNA gene
• IDs
  MGI:5663914
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:124894865-124895376 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663914	lncRNA gene	Chr5:124894865-124895376 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004183	antisense lncRNA gene	Chr5:128601793-128602304 (-)
A/J	MGP_AJ_G0004162	antisense lncRNA gene	Chr5:123238201-123238712 (-)
AKR/J	MGP_AKRJ_G0004143	antisense lncRNA gene	Chr5:127223621-127224132 (-)
BALB/cJ	MGP_BALBcJ_G0004148	antisense lncRNA gene	Chr5:124573520-124574031 (-)
C3H/HeJ	MGP_C3HHeJ_G0004096	antisense lncRNA gene	Chr5:127822188-127822699 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004296	antisense lncRNA gene	Chr5:133602645-133603156 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003773	antisense lncRNA gene	Chr5:117772006-117772525 (-)
CAST/EiJ	MGP_CASTEiJ_G0004058	antisense lncRNA gene	Chr5:126947977-126948488 (-)
CBA/J	MGP_CBAJ_G0004090	antisense lncRNA gene	Chr5:138819435-138819946 (-)
DBA/2J	MGP_DBA2J_G0004106	antisense lncRNA gene	Chr5:123256753-123257264 (-)
FVB/NJ	MGP_FVBNJ_G0004122	antisense lncRNA gene	Chr5:122303288-122303799 (-)
LP/J	MGP_LPJ_G0004184	antisense lncRNA gene	Chr5:129131587-129132098 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004112	antisense lncRNA gene	Chr5:142372391-142372902 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004294	antisense lncRNA gene	Chr5:126836373-126836884 (-)
PWK/PhJ	MGP_PWKPhJ_G0004012	antisense lncRNA gene	Chr5:122088952-122089463 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003955	antisense lncRNA gene	Chr5:124471248-124471759 (-)
WSB/EiJ	MGP_WSBEiJ_G0004095	antisense lncRNA gene	Chr5:127527828-127528339 (-)

Homology

• Gene Tree
  Gm43777
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105583 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105583	Ensembl Gene Model | MGI Sequence Detail	512	C57BL/6J
transcript	ENSMUST00000197269	Ensembl | MGI Sequence Detail	376	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;