Gm43802 Pseudogene Detail

Summary

• Symbol
  Gm43802
• Name
  predicted gene 43802

• Feature Type
  pseudogene
• IDs
  MGI:5663939
• Alliance
  gene page
• Transcription Start Sites
  19 TSS

Location &
Maps

• Sequence Map
  Chr3:142253643-142254279 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663939	pseudogene	Chr3:142253643-142254279 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012456	pseudogene	Chr3:145736014-145736649 (+)
A/J	MGP_AJ_G0012451	pseudogene	Chr3:140578137-140578772 (+)
AKR/J	MGP_AKRJ_G0012414	pseudogene	Chr3:144287529-144288164 (+)
BALB/cJ	MGP_BALBcJ_G0012433	pseudogene	Chr3:140380972-140381606 (+)
C3H/HeJ	MGP_C3HHeJ_G0012297	pseudogene	Chr3:144640433-144641068 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012747	pseudogene	Chr3:150809697-150810333 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011102	pseudogene	Chr3:135813819-135814448 (+)
CAST/EiJ	MGP_CASTEiJ_G0012062	pseudogene	Chr3:144560672-144561303 (+)
CBA/J	MGP_CBAJ_G0012276	pseudogene	Chr3:155997810-155998441 (+)
DBA/2J	MGP_DBA2J_G0012328	pseudogene	Chr3:139708227-139708864 (+)
FVB/NJ	MGP_FVBNJ_G0012331	pseudogene	Chr3:137131257-137131894 (+)
LP/J	MGP_LPJ_G0012406	pseudogene	Chr3:147167087-147167722 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012338	pseudogene	Chr3:164317701-164318337 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012748	pseudogene	Chr3:143905199-143905835 (+)
PWK/PhJ	MGP_PWKPhJ_G0011901	pseudogene	Chr3:139521071-139521702 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011719	pseudogene	Chr3:142026351-142026986 (+)
WSB/EiJ	MGP_WSBEiJ_G0012090	pseudogene	Chr3:144761983-144762620 (+)

Homology

• Gene Tree
  Gm43802
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm43802
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105338 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105338	Ensembl Gene Model | MGI Sequence Detail	637	C57BL/6J
transcript	ENSMUST00000197826	Ensembl | MGI Sequence Detail	637	Not Applicable

References

• Summaries
  All 4

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm43802:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32126	Chr3:142251722-142251749 (+)	-1,907 bp
Tssr32127	Chr3:142252193-142252204 (+)	-1,444 bp
Tssr32128	Chr3:142252270-142252281 (+)	-1,367 bp
Tssr32129	Chr3:142252716-142252728 (+)	-921 bp
Tssr32130	Chr3:142252741-142252753 (+)	-896 bp
Tssr32131	Chr3:142252899-142252900 (+)	-743 bp
Tssr32132	Chr3:142252915-142252927 (+)	-722 bp
Tssr32133	Chr3:142252932-142252943 (+)	-705 bp
Tssr32134	Chr3:142252970-142252985 (+)	-665 bp
Tssr32135	Chr3:142252993-142253011 (+)	-641 bp
Tssr32136	Chr3:142253026-142253031 (+)	-614 bp
Tssr32137	Chr3:142253080-142253092 (+)	-557 bp
Tssr32138	Chr3:142253131-142253144 (+)	-505 bp
Tssr32139	Chr3:142253157-142253168 (+)	-480 bp
Tssr32140	Chr3:142253222-142253242 (+)	-411 bp
Tssr32141	Chr3:142253282-142253327 (+)	-338 bp
Tssr32142	Chr3:142253523-142253530 (+)	-116 bp
Tssr32143	Chr3:142253894-142253914 (+)	261 bp
Tssr32144	Chr3:142253971-142253986 (+)	336 bp