Gm43838 Gene Detail

Summary

• Symbol
  Gm43838
• Name
  predicted gene 43838

• Feature Type
  lncRNA gene
• IDs
  MGI:5663975
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:64517857-64520974 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663975	lncRNA gene	Chr5:64517857-64520974 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006651	lincRNA gene	Chr5:63946504-63949385 (+)
A/J	MGP_AJ_G0006645	lincRNA gene	Chr5:61573952-61577115 (+)
AKR/J	MGP_AKRJ_G0006615	lincRNA gene	Chr5:63489919-63492947 (+)
BALB/cJ	MGP_BALBcJ_G0006620	lincRNA gene	Chr5:62245498-62248455 (+)
C3H/HeJ	MGP_C3HHeJ_G0006567	lincRNA gene	Chr5:63855780-63859199 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006785	lincRNA gene	Chr5:66591969-66595213 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006045	lincRNA gene	Chr5:57679459-57681478 (+)
CAST/EiJ	MGP_CASTEiJ_G0006489	lincRNA gene	Chr5:62929577-62932699 (+)
CBA/J	MGP_CBAJ_G0006548	lincRNA gene	Chr5:68737205-68743479 (+)
DBA/2J	MGP_DBA2J_G0006568	lincRNA gene	Chr5:61593493-61595512 (+)
FVB/NJ	MGP_FVBNJ_G0006592	lincRNA gene	Chr5:60773242-60776311 (+)
LP/J	MGP_LPJ_G0006652	lincRNA gene	Chr5:64406666-64409926 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006576	lincRNA gene	Chr5:71657050-71661751 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006787	lincRNA gene	Chr5:63183142-63185807 (+)
PWK/PhJ	MGP_PWKPhJ_G0006428	lincRNA gene	Chr5:60566705-60570176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006336	lincRNA gene	Chr5:62530012-62532722 (+)
WSB/EiJ	MGP_WSBEiJ_G0006540	lincRNA gene	Chr5:63398391-63403066 (+)

Homology

• Gene Tree
  Gm43838
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43838
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105730	Ensembl Gene Model | MGI Sequence Detail	3118	C57BL/6J
transcript	ENSMUST00000196357	Ensembl | MGI Sequence Detail	348	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43838:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46397	Chr5:64517708-64517751 (+)	-127 bp