Gm43847 Gene Detail

Summary

• Symbol
  Gm43847
• Name
  predicted gene 43847

• Feature Type
  lncRNA gene
• IDs
  MGI:5663984
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:105410223-105412162 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663984	lncRNA gene	Chr3:105410223-105412162 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036995	sense intronic lncRNA gene	Chr3:106867287-106869226 (+)
A/J	MGP_AJ_G0036984	sense intronic lncRNA gene	Chr3:103452397-103454345 (+)
AKR/J	MGP_AKRJ_G0036931	sense intronic lncRNA gene	Chr3:106021916-106023864 (+)
BALB/cJ	MGP_BALBcJ_G0036974	sense intronic lncRNA gene	Chr3:103235721-103237660 (+)
C3H/HeJ	MGP_C3HHeJ_G0036661	sense intronic lncRNA gene	Chr3:106361997-106363945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037487	sense intronic lncRNA gene	Chr3:110864224-110866163 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034539	sense intronic lncRNA gene	Chr3:99531992-99533909 (+)
CAST/EiJ	MGP_CASTEiJ_G0035849	sense intronic lncRNA gene	Chr3:105503041-105504992 (+)
CBA/J	MGP_CBAJ_G0036636	sense intronic lncRNA gene	Chr3:114594495-114596443 (+)
DBA/2J	MGP_DBA2J_G0036811	sense intronic lncRNA gene	Chr3:102691934-102693882 (+)
FVB/NJ	MGP_FVBNJ_G0036761	sense intronic lncRNA gene	Chr3:100624296-100626235 (+)
LP/J	MGP_LPJ_G0036858	sense intronic lncRNA gene	Chr3:108258489-108260428 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036769	sense intronic lncRNA gene	Chr3:120719419-120721358 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037605	sense intronic lncRNA gene	Chr3:105567194-105569144 (+)
PWK/PhJ	MGP_PWKPhJ_G0035541	sense intronic lncRNA gene	Chr3:102469915-102471865 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035350	sense intronic lncRNA gene	Chr3:103600109-103602072 (+)
WSB/EiJ	MGP_WSBEiJ_G0036049	sense intronic lncRNA gene	Chr3:106125834-106127773 (+)

Homology

• Gene Tree
  Gm43847
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105753 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105753	Ensembl Gene Model | MGI Sequence Detail	1940	C57BL/6J
transcript	ENSMUST00000200070	Ensembl | MGI Sequence Detail	1940	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;