Gm43911 Pseudogene Detail

Summary

• Symbol
  Gm43911
• Name
  predicted gene, 43911

• Feature Type
  pseudogene
• IDs
  MGI:5690303
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:114030904-114030979 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690303	pseudogene	Chr6:114030904-114030979 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013654	pseudogene	Chr6:116614298-116614373 (+)
A/J	MGP_AJ_G0013638	pseudogene	Chr6:112137132-112137207 (+)
AKR/J	MGP_AKRJ_G0013601	pseudogene	Chr6:115153594-115153669 (+)
BALB/cJ	MGP_BALBcJ_G0013618	pseudogene	Chr6:112084278-112084353 (+)
C3H/HeJ	MGP_C3HHeJ_G0013320	pseudogene	Chr6:69143394-69143469 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014005	pseudogene	Chr6:119609492-119609567 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012016	pseudogene	Chr6:109166292-109166367 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013436	pseudogene	Chr6:124362901-124362976 (+)
DBA/2J	MGP_DBA2J_G0013516	pseudogene	Chr6:111215717-111215792 (+)
FVB/NJ	MGP_FVBNJ_G0013516	pseudogene	Chr6:110226991-110227058 (+)
LP/J	MGP_LPJ_G0013593	pseudogene	Chr6:116631900-116631975 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013529	pseudogene	Chr6:128567778-128567853 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013995	pseudogene	Chr6:115180477-115180552 (+)
PWK/PhJ	MGP_PWKPhJ_G0012960	pseudogene	Chr6:110185082-110185157 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012744	pseudogene	Chr6:113979233-113979308 (+)
WSB/EiJ	MGP_WSBEiJ_G0013207	pseudogene	Chr6:115545202-115545277 (+)

Homology

• Gene Tree
  Gm43911
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107540 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107540	Ensembl Gene Model | MGI Sequence Detail	76	C57BL/6J
transcript	ENSMUST00000203097	Ensembl | MGI Sequence Detail	76	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;