Gm43919 Pseudogene Detail

Summary

• Symbol
  Gm43919
• Name
  predicted gene, 43919

• Feature Type
  pseudogene
• IDs
  MGI:5690311
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:83873941-83874304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690311	pseudogene	Chr6:83873941-83874304 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013577	pseudogene	Chr6:84938117-84938480 (+)
A/J	MGP_AJ_G0013557	pseudogene	Chr6:81703303-81703666 (+)
AKR/J	MGP_AKRJ_G0013519	pseudogene	Chr6:84067001-84067364 (+)
BALB/cJ	MGP_BALBcJ_G0013537	pseudogene	Chr6:81731402-81731765 (+)
C3H/HeJ	MGP_C3HHeJ_G0013398	pseudogene	Chr6:100344874-100345237 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013925	pseudogene	Chr6:87284252-87284615 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011966	pseudogene	Chr6:80070894-80071257 (+)
CAST/EiJ	MGP_CASTEiJ_G0013081	pseudogene	Chr6:84091637-84092000 (+)
CBA/J	MGP_CBAJ_G0013357	pseudogene	Chr6:90709008-90709371 (+)
DBA/2J	MGP_DBA2J_G0013437	pseudogene	Chr6:81016637-81017000 (+)
FVB/NJ	MGP_FVBNJ_G0013437	pseudogene	Chr6:80230135-80230498 (+)
LP/J	MGP_LPJ_G0013513	pseudogene	Chr6:84941122-84941485 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013449	pseudogene	Chr6:94981927-94982290 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013916	pseudogene	Chr6:83891671-83892034 (+)
PWK/PhJ	MGP_PWKPhJ_G0012887	pseudogene	Chr6:79929750-79930113 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012667	pseudogene	Chr6:82719449-82719812 (+)
WSB/EiJ	MGP_WSBEiJ_G0013129	pseudogene	Chr6:84316423-84316786 (+)

Homology

• Gene Tree
  Gm43919
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43919
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107991 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107991	Ensembl Gene Model | MGI Sequence Detail	364	C57BL/6J
transcript	ENSMUST00000204303	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48