Gm43959 Pseudogene Detail

Summary

• Symbol
  Gm43959
• Name
  predicted gene, 43959

• Feature Type
  pseudogene
• IDs
  MGI:5690351
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:85088675-85089251 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690351	pseudogene	Chr6:85088675-85089251 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013584	pseudogene	Chr6:86228978-86229555 (+)
A/J	MGP_AJ_G0013564	pseudogene	Chr6:82933519-82934096 (+)
AKR/J	MGP_AKRJ_G0013526	pseudogene	Chr6:85340773-85341350 (+)
BALB/cJ	MGP_BALBcJ_G0013544	pseudogene	Chr6:82952600-82953176 (+)
C3H/HeJ	MGP_C3HHeJ_G0013392	pseudogene	Chr6:99093224-99093800 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013932	pseudogene	Chr6:88602792-88603368 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011970	pseudogene	Chr6:81258219-81258796 (+)
CAST/EiJ	MGP_CASTEiJ_G0013086	pseudogene	Chr6:85374455-85375031 (+)
CBA/J	MGP_CBAJ_G0013364	pseudogene	Chr6:92096407-92096983 (+)
DBA/2J	MGP_DBA2J_G0013444	pseudogene	Chr6:82238497-82239073 (+)
FVB/NJ	MGP_FVBNJ_G0013444	pseudogene	Chr6:81441744-81442321 (+)
LP/J	MGP_LPJ_G0013519	pseudogene	Chr6:86215282-86215859 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013456	pseudogene	Chr6:96301822-96302399 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013923	pseudogene	Chr6:85160400-85160977 (+)
PWK/PhJ	MGP_PWKPhJ_G0012892	pseudogene	Chr6:81174416-81174992 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012672	pseudogene	Chr6:84009553-84010129 (+)
WSB/EiJ	MGP_WSBEiJ_G0013135	pseudogene	Chr6:85594944-85595520 (+)

Homology

• Gene Tree
  Gm43959
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43959
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107769 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107769	Ensembl Gene Model | MGI Sequence Detail	577	C57BL/6J
transcript	ENSMUST00000203740	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48