Gm43968 Pseudogene Detail

Summary

• Symbol
  Gm43968
• Name
  predicted gene, 43968

• Feature Type
  pseudogene
• IDs
  MGI:5690360
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:133841017-133841683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690360	pseudogene	Chr6:133841017-133841683 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013745	pseudogene	Chr6:138098461-138099123 (+)
A/J	MGP_AJ_G0013740	pseudogene	Chr6:132715835-132716503 (+)
AKR/J	MGP_AKRJ_G0013695	pseudogene	Chr6:136727658-136728326 (+)
BALB/cJ	MGP_BALBcJ_G0013721	pseudogene	Chr6:132521611-132522279 (+)
C3H/HeJ	MGP_C3HHeJ_G0013551	pseudogene	Chr6:136781761-136782429 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014115	pseudogene	Chr6:141867936-141868602 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012066	pseudogene	Chr6:131106436-131107109 (+)
CAST/EiJ	MGP_CASTEiJ_G0013235	pseudogene	Chr6:136132739-136133406 (+)
CBA/J	MGP_CBAJ_G0013528	pseudogene	Chr6:147131306-147131974 (+)
DBA/2J	MGP_DBA2J_G0013608	pseudogene	Chr6:131560745-131561413 (+)
FVB/NJ	MGP_FVBNJ_G0013602	pseudogene	Chr6:130470617-130473182 (+)
LP/J	MGP_LPJ_G0013690	pseudogene	Chr6:138218045-138218713 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013619	pseudogene	Chr6:151256676-151257344 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014096	pseudogene	Chr6:136470221-136470887 (+)
PWK/PhJ	MGP_PWKPhJ_G0013047	pseudogene	Chr6:130017458-130018716 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012825	pseudogene	Chr6:134621670-134624648 (+)
WSB/EiJ	MGP_WSBEiJ_G0013296	pseudogene	Chr6:137078848-137079514 (+)

Homology

• Gene Tree
  Gm43968
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107890 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107890	Ensembl Gene Model | MGI Sequence Detail	667	C57BL/6J
transcript	ENSMUST00000203388	Ensembl | MGI Sequence Detail	389	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;