Gm44012 Gene Detail

Summary

• Symbol
  Gm44012
• Name
  predicted gene, 44012

• Feature Type
  lncRNA gene
• IDs
  MGI:5690404
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:84898105-84901978 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690404	lncRNA gene	Chr6:84898105-84901978 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004303	antisense lncRNA gene	Chr6:86027257-86031128 (+)
A/J	MGP_AJ_G0004281	antisense lncRNA gene	Chr6:82732100-82735973 (+)
AKR/J	MGP_AKRJ_G0004263	antisense lncRNA gene	Chr6:85141039-85144912 (+)
BALB/cJ	MGP_BALBcJ_G0004267	antisense lncRNA gene	Chr6:82760881-82764754 (+)
C3H/HeJ	MGP_C3HHeJ_G0004238	antisense lncRNA gene	Chr6:99293011-99296884 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004416	antisense lncRNA gene	Chr6:88379792-88383665 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004177	antisense lncRNA gene	Chr6:85161551-85165424 (+)
CBA/J	MGP_CBAJ_G0004209	antisense lncRNA gene	Chr6:91874125-91877998 (+)
DBA/2J	MGP_DBA2J_G0004225	antisense lncRNA gene	Chr6:82041529-82045402 (+)
FVB/NJ	MGP_FVBNJ_G0004241	antisense lncRNA gene	Chr6:81252025-81255898 (+)
LP/J	MGP_LPJ_G0004304	antisense lncRNA gene	Chr6:86015018-86018891 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004232	antisense lncRNA gene	Chr6:96081650-96085523 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004414	antisense lncRNA gene	Chr6:84961288-84965161 (+)
PWK/PhJ	MGP_PWKPhJ_G0004130	antisense lncRNA gene	Chr6:80975737-80979566 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004074	antisense lncRNA gene	Chr6:83800394-83803274 (+)
WSB/EiJ	MGP_WSBEiJ_G0004214	antisense lncRNA gene	Chr6:85396178-85400059 (+)

Homology

• Gene Tree
  Gm44012
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm44012
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000108012 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108012	Ensembl Gene Model | MGI Sequence Detail	3874	C57BL/6J
transcript	ENSMUST00000204154	Ensembl | MGI Sequence Detail	424	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48