Gm44026 Gene Detail

Summary

• Symbol
  Gm44026
• Name
  predicted gene, 44026

• Feature Type
  lncRNA gene
• IDs
  MGI:5690418
  NCBI Gene: 108169145
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:54440670-54450155 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  396 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690418	lncRNA gene	Chr6:54433731-54450155 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004276	antisense lncRNA gene	Chr6:53814777-53824586 (-)
A/J	MGP_AJ_G0004254	antisense lncRNA gene	Chr6:51326351-51335812 (-)
AKR/J	MGP_AKRJ_G0004235	antisense lncRNA gene	Chr6:53069149-53078612 (-)
BALB/cJ	MGP_BALBcJ_G0004241	antisense lncRNA gene	Chr6:51676810-51686285 (-)
C3H/HeJ	MGP_C3HHeJ_G0004189	antisense lncRNA gene	Chr6:53085596-53095075 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004390	antisense lncRNA gene	Chr6:55018366-55027839 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003863	antisense lncRNA gene	Chr6:48931418-48941628 (-)
CAST/EiJ	MGP_CASTEiJ_G0004151	antisense lncRNA gene	Chr6:52932160-52942989 (-)
CBA/J	MGP_CBAJ_G0004183	antisense lncRNA gene	Chr6:57281957-57291526 (-)
DBA/2J	MGP_DBA2J_G0004199	antisense lncRNA gene	Chr6:51226671-51236168 (-)
FVB/NJ	MGP_FVBNJ_G0004215	antisense lncRNA gene	Chr6:50812617-50822114 (-)
LP/J	MGP_LPJ_G0004277	antisense lncRNA gene	Chr6:53763926-53773423 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004205	antisense lncRNA gene	Chr6:59821076-59830555 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004387	antisense lncRNA gene	Chr6:53014405-53023896 (-)
PWK/PhJ	MGP_PWKPhJ_G0004104	antisense lncRNA gene	Chr6:50877615-50887155 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004048	antisense lncRNA gene	Chr6:52387822-52398417 (-)
WSB/EiJ	MGP_WSBEiJ_G0004187	antisense lncRNA gene	Chr6:53041754-53051227 (-)

Homology

• Gene Tree
  Gm44026
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108081 (Evidence)
• NCBI Gene
  108169145

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108081	Ensembl Gene Model | MGI Sequence Detail	9486	C57BL/6J
transcript	ENSMUST00000203985	Ensembl | MGI Sequence Detail	2088	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44026:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61076	Chr6:54450139-54450159 (-)	6 bp