Gm44040 Gene Detail

Summary

• Symbol
  Gm44040
• Name
  predicted gene, 44040

• Feature Type
  lncRNA gene
• IDs
  MGI:5690432
  NCBI Gene: 115490428
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:108495990-108502648 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  277 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690432	lncRNA gene	Chr6:108495990-108509870 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004331	antisense lncRNA gene	Chr6:110778845-110785534 (-)
A/J	MGP_AJ_G0004309	antisense lncRNA gene	Chr6:106587955-106594606 (-)
AKR/J	MGP_AKRJ_G0004291	antisense lncRNA gene	Chr6:109467033-109473684 (-)
BALB/cJ	MGP_BALBcJ_G0004295	antisense lncRNA gene	Chr6:106517530-106524181 (-)
C3H/HeJ	MGP_C3HHeJ_G0004210	antisense lncRNA gene	Chr6:74882468-74889119 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004444	antisense lncRNA gene	Chr6:113695690-113702348 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003912	antisense lncRNA gene	Chr6:103886157-103892755 (-)
CAST/EiJ	MGP_CASTEiJ_G0004205	antisense lncRNA gene	Chr6:109837282-109844000 (-)
CBA/J	MGP_CBAJ_G0004237	antisense lncRNA gene	Chr6:118076642-118083293 (-)
DBA/2J	MGP_DBA2J_G0004253	antisense lncRNA gene	Chr6:105728563-105735233 (-)
FVB/NJ	MGP_FVBNJ_G0004269	antisense lncRNA gene	Chr6:104757427-104764128 (-)
LP/J	MGP_LPJ_G0004332	antisense lncRNA gene	Chr6:110850496-110857193 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004260	antisense lncRNA gene	Chr6:122306062-122312755 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004442	antisense lncRNA gene	Chr6:109406313-109412972 (-)
PWK/PhJ	MGP_PWKPhJ_G0004158	antisense lncRNA gene	Chr6:104645302-104652075 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004101	antisense lncRNA gene	Chr6:108200319-108206799 (-)
WSB/EiJ	MGP_WSBEiJ_G0004242	antisense lncRNA gene	Chr6:109949350-109956038 (-)

Homology

• Gene Tree
  Gm44040
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000107458 (Evidence)
• NCBI Gene
  115490428

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107458	Ensembl Gene Model | MGI Sequence Detail	6659	C57BL/6J
transcript	ENSMUST00000203360	Ensembl | MGI Sequence Detail	545	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;