Gm44088 Pseudogene Detail

Summary

• Symbol
  Gm44088
• Name
  predicted gene, 44088

• Feature Type
  pseudogene
• IDs
  MGI:5690480
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:62607565-62607801 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690480	pseudogene	Chr6:62607565-62607801 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013484	pseudogene	Chr6:62457347-62457583 (+)
A/J	MGP_AJ_G0013470	pseudogene	Chr6:59692530-59692766 (+)
AKR/J	MGP_AKRJ_G0013437	pseudogene	Chr6:61654495-61654731 (+)
BALB/cJ	MGP_BALBcJ_G0013449	pseudogene	Chr6:60136718-60136954 (+)
C3H/HeJ	MGP_C3HHeJ_G0013298	pseudogene	Chr6:61744167-61744403 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013834	pseudogene	Chr6:63880463-63880699 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013004	pseudogene	Chr6:61828808-61829044 (+)
CBA/J	MGP_CBAJ_G0013267	pseudogene	Chr6:66532060-66532296 (+)
DBA/2J	MGP_DBA2J_G0013351	pseudogene	Chr6:59425090-59425326 (+)
FVB/NJ	MGP_FVBNJ_G0013349	pseudogene	Chr6:58980219-58980455 (+)
LP/J	MGP_LPJ_G0013421	pseudogene	Chr6:62394627-62394863 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013368	pseudogene	Chr6:69831789-69832025 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013832	pseudogene	Chr6:61562936-61563172 (+)
PWK/PhJ	MGP_PWKPhJ_G0012811	pseudogene	Chr6:58612224-58612460 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012595	pseudogene	Chr6:61051956-61052192 (+)
WSB/EiJ	MGP_WSBEiJ_G0013051	pseudogene	Chr6:61895432-61895668 (+)

Homology

• Gene Tree
  Gm44088
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107957 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107957	Ensembl Gene Model | MGI Sequence Detail	237	C57BL/6J
transcript	ENSMUST00000204595	Ensembl | MGI Sequence Detail	237	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;