Gm44089 Gene Detail

Summary

• Symbol
  Gm44089
• Name
  predicted gene, 44089

• Feature Type
  lncRNA gene
• IDs
  MGI:5690481
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:86061348-86064062 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690481	lncRNA gene	Chr6:86061348-86064062 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004305	antisense lncRNA gene	Chr6:87344176-87346896 (-)
A/J	MGP_AJ_G0004283	antisense lncRNA gene	Chr6:83979022-83981743 (-)
AKR/J	MGP_AKRJ_G0004265	antisense lncRNA gene	Chr6:86409980-86412694 (-)
BALB/cJ	MGP_BALBcJ_G0004269	antisense lncRNA gene	Chr6:83981512-83984226 (-)
C3H/HeJ	MGP_C3HHeJ_G0004236	antisense lncRNA gene	Chr6:98049769-98052485 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004418	antisense lncRNA gene	Chr6:89725390-89728104 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003890	antisense lncRNA gene	Chr6:82140194-82142942 (-)
CAST/EiJ	MGP_CASTEiJ_G0004179	antisense lncRNA gene	Chr6:86466659-86469405 (-)
CBA/J	MGP_CBAJ_G0004211	antisense lncRNA gene	Chr6:93247448-93250165 (-)
DBA/2J	MGP_DBA2J_G0004227	antisense lncRNA gene	Chr6:83298786-83301498 (-)
FVB/NJ	MGP_FVBNJ_G0004243	antisense lncRNA gene	Chr6:82478655-82481375 (-)
LP/J	MGP_LPJ_G0004306	antisense lncRNA gene	Chr6:87385528-87388254 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004234	antisense lncRNA gene	Chr6:97401716-97404449 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004416	antisense lncRNA gene	Chr6:86258158-86260882 (-)
PWK/PhJ	MGP_PWKPhJ_G0004132	antisense lncRNA gene	Chr6:82235834-82238578 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004075	antisense lncRNA gene	Chr6:85093104-85095813 (-)
WSB/EiJ	MGP_WSBEiJ_G0004216	antisense lncRNA gene	Chr6:86699309-86702020 (-)

Homology

• Gene Tree
  Gm44089
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107842 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107842	Ensembl Gene Model | MGI Sequence Detail	2715	C57BL/6J
transcript	ENSMUST00000203624	Ensembl | MGI Sequence Detail	1930	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;